Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2366 GTCACGTTCATTTCAAACTTCAAACTAAGTAGAAGGATACCTGCTATGGCTTCTAATCTTCCAACTATCGCTGCCGCAACGGCAAGGTCCGCTGCCACGACGACGTCGTTTCAGGAAAAACATTACCGTTCGGTCTTCGAGCTCTCACCTAGCGTCTTCGACTCTTGCTACTTTCTACCTTCTACTCACTCTTCGATTTACGAGCCCAACGACAATGATCGTCGCAACGTAGGCCTTGAAACGCCCTCAAACAACGTCGTCGCCGATGGTCCCCAAGACACCATCGTTTCAGCGCCTAGGTGGACGTGCAACACCTGTAAGGCCCAATTCGATTCCCTCCAAGACCAGCGTTCGCATTTCAAATCTGATATTCATCGATTCAATGTGAAGCTGACAGTTGCGGGAAAGAATATTGTTAAGGAAGAGGATTTTGAGGTGTTGACATCTGAATTTGTCAAAGACTATGATGTTTCAAGCATATCAGGATCAGAGAGTGACAGCGACAGTGAAAATGAGTCTCAAAATCGCAATGAAGTGCGTGACAAATCAAGAGAAATTCTTAAACAAAAGCTATTTGTTGGTCTTCAATCAGGTCAAAGTGTTTCTCTCTGGAAGTGCTTGATTATGAATATGAGTGATGAGAATGGAAGTGCAGAGAACGAAGTGTGTGAGAGGTTGAAATCTCTGACTCTTGAGCCCAGGGATAATAGTCATTTGCGAATCGTACTGCTTGCATCTGGTGGACACTTTGCTGGTTGTGTCTTTGATGGTGATGCAGTTGTGGCTCACAAGACCTTTCACAGATATGTTGTGAGGGCCAAGGCTGGAAAGAAACAATCATCAAAAGATGCTTCTGGAAGGGCTGCACATTCTGCTGGTGCTTCACTTCGTCGTCATAATGAACTTGCATTAAAAAAGGAAGTTCAAGAACTGCTTACTTCTTGGCGACCTTATTTTGATGCTTCCAAATGCATTTTTATAAATGCACCTTCAAGTAGTCGTCAATTGTTCTATAATGGAGAAAAATCACTCTTTTCCAATCCGCATTGTGCTATCAGAAATATTCCTTTCACTGTTCGGAGGCCTACTTTTAGGGAAGCAAAACGTGTATATAGCCAGTTGACTCAAGTATCCTTTGAAACGGATGAGAAGGAAACATTACAAAGCAACCAAGAGGGCTTAATATCAATTCCAACTGCTGTAAGAAATACAGACCTACTCTCCAGCAAAGGGGACATGATTGAGTTGGATAACAAAGATGAGGCTAAAGCTAGTTCAAGCAAAAAGGATGCACAACCTGTTTTGAGTGATGAAGAGAGTGAGAATGAGCTACCTGGCATATCAACTCCATTACATCAAGCAGCAAAATCTGGAGATGCTCACAATGTCATGGAACTCCTGGAACAGGGCTTGGATCCTTGCATTAAAGATGAAAGGGGGCGGACTCCATATATGTTGGCTAATGAGAAGGAAGTCAGAAATATTTTTAGAAGGTTCATGGCATCAAACCCTGACAAATGGGATTGGCATGCTGCAAAAGTTCCTAGTGCATTGACCAAAGAAATGGAAGAATCACAAGCTGCTAAACAGGCAGAAAAAGAAGCCAAGAGAAAAGCCAGAGCAAAAGAGTTAAAGAAACTAAAGAAAGCCAAAGAAAAGAGGGCACAGGCAGAAGCTGCGTTGCTTAAGAATGACTCGAAGGCTGCAGAGAAGCAAATGACTGCCCCAGCTTCTTCTAAGGGACAATCACAATCCAAAAGTGGTGTGAAATTATCTAAAGAGGAGGAAATAAGAAGAGCGCAGGCTGAAGAAAGAGAAAAGAGAGCAGCTGCCGCAGAGAGAAGAATAGCTGCCCTCAAAATTCAAGAGAACTGTTCAACCTCCACACATGCCATTTCAGAACCTAAAGGAGGATTAGCTGGTGAAATTTACTGTTCCTGTTGTAATTCATCACTTGCTGGTAAAGTTCCCTTCCACCGCTATAATTATAATTACTGCAGCACATCATGCATGCACGTACACAGGGAGTTCCTAGAAGATGGATGA 2046 0.4306 VTFISNFKLSRRIPAMASNLPTIAAATARSAATTTSFQEKHYRSVFELSPSVFDSCYFLPSTHSSIYEPNDNDRRNVGLETPSNNVVADGPQDTIVSAPRWTCNTCKAQFDSLQDQRSHFKSDIHRFNVKLTVAGKNIVKEEDFEVLTSEFVKDYDVSSISGSESDSDSENESQNRNEVRDKSREILKQKLFVGLQSGQSVSLWKCLIMNMSDENGSAENEVCERLKSLTLEPRDNSHLRIVLLASGGHFAGCVFDGDAVVAHKTFHRYVVRAKAGKKQSSKDASGRAAHSAGASLRRHNELALKKEVQELLTSWRPYFDASKCIFINAPSSSRQLFYNGEKSLFSNPHCAIRNIPFTVRRPTFREAKRVYSQLTQVSFETDEKETLQSNQEGLISIPTAVRNTDLLSSKGDMIELDNKDEAKASSSKKDAQPVLSDEESENELPGISTPLHQAAKSGDAHNVMELLEQGLDPCIKDERGRTPYMLANEKEVRNIFRRFMASNPDKWDWHAAKVPSALTKEMEESQAAKQAEKEAKRKARAKELKKLKKAKEKRAQAEAALLKNDSKAAEKQMTAPASSKGQSQSKSGVKLSKEEEIRRAQAEEREKRAAAAERRIAALKIQENCSTSTHAISEPKGGLAGEIYCSCCNSSLAGKVPFHRYNYNYCSTSCMHVHREFLEDG* 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2366 681 MobiDBLite consensus disorder prediction 524 603 - -
Amo13g2366 681 MobiDBLite consensus disorder prediction 589 603 - -
Amo13g2366 681 MobiDBLite consensus disorder prediction 158 181 - -
Amo13g2366 681 ProSiteProfiles Ankyrin repeat region circular profile. 449 478 - -
Amo13g2366 681 MobiDBLite consensus disorder prediction 525 539 - -
Amo13g2366 681 MobiDBLite consensus disorder prediction 417 456 - -
Amo13g2366 681 ProSitePatterns Zinc finger C2H2 type domain signature. 103 125 IPR013087 -
Amo13g2366 681 Pfam Vms1-associating treble clef domain 644 676 IPR041540 -
Amo13g2366 681 SUPERFAMILY beta-beta-alpha zinc fingers 99 133 IPR036236 -
Amo13g2366 681 MobiDBLite consensus disorder prediction 417 436 - -
Amo13g2366 681 Gene3D - 437 557 IPR036770 -
Amo13g2366 681 SUPERFAMILY Ankyrin repeat 449 503 IPR036770 -
Amo13g2366 681 MobiDBLite consensus disorder prediction 571 588 - -
Amo13g2366 681 PANTHER ANKYRIN REPEAT AND ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 38 676 - -
Amo13g2366 681 Coils Coil 593 622 - -
Amo13g2366 681 Pfam Bacteroidetes VLRF1 release factor 241 380 IPR041175 -
Amo13g2366 681 Coils Coil 518 572 - -
Amo13g2366 681 ProSiteProfiles Ankyrin repeat profile. 449 478 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2366 Amo-Chr13 40921856 40929387 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2366 40 628 C2H2 Transcription Factor Family AT1G01930 54.605 0.0 572