Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2360 ATGTACGGTTCTGGCAGTAAGAATGACTTATCTGTCAACTTTTCCACTATCACCCCCAAACAACCAAATTCTGCCATACGTAAAGTTGCCAGAGTACGCTTAACTTCTGGATTTAAAATCACTGCTTATATACCCGGTATTGRCCATAATTTACAAGAACATTCTGTAGTCTTAATAAGAGGAGGAAGGGTTAAGGATTTATCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAMAGGATCGTCAACAAGGTWGTTCTAGTGCGTTAAAGCCGTATTTGATGAAAGTCATATGTACGGCTTGGGAGGAGATCTTTCATATCTTTCGAGATCCACCCTACAATATGGGGCCAAAAAGCTAA 378 0.4074 MYGSGSKNDLSVNFSTITPKQPNSAIRKVARVRLTSGFKITAYIPGIXHNLQEHSVVLIRGGRVKDLSGVRYHIVRGTLDAVGVXDRQQGXSSALKPYLMKVICTAWEEIFHIFRDPPYNMGPKS* 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2360 125 CDD Ribosomal_S12 16 87 IPR005679 GO:0003735|GO:0006412|GO:0015935
Amo13g2360 125 Gene3D - 1 101 IPR012340 -
Amo13g2360 125 PRINTS Ribosomal protein S12 signature 19 34 IPR006032 GO:0003735|GO:0005840|GO:0006412
Amo13g2360 125 PRINTS Ribosomal protein S12 signature 4 19 IPR006032 GO:0003735|GO:0005840|GO:0006412
Amo13g2360 125 PRINTS Ribosomal protein S12 signature 35 54 IPR006032 GO:0003735|GO:0005840|GO:0006412
Amo13g2360 125 PRINTS Ribosomal protein S12 signature 71 87 IPR006032 GO:0003735|GO:0005840|GO:0006412
Amo13g2360 125 PRINTS Ribosomal protein S12 signature 54 71 IPR006032 GO:0003735|GO:0005840|GO:0006412
Amo13g2360 125 SUPERFAMILY Nucleic acid-binding proteins 12 92 IPR012340 -
Amo13g2360 125 Pfam Ribosomal protein S12/S23 6 85 IPR006032 GO:0003735|GO:0005840|GO:0006412
Amo13g2360 125 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 4 95 IPR006032 GO:0003735|GO:0005840|GO:0006412
Amo13g2360 125 PANTHER 30S RIBOSOMAL PROTEIN S12-B 4 95 - -
Amo13g2360 125 ProSitePatterns Ribosomal protein S12 signature. 20 27 IPR006032 GO:0003735|GO:0005840|GO:0006412
Amo13g2360 125 TIGRFAM rpsL_bact: ribosomal protein uS12 7 92 IPR005679 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2360 Amo-Chr13 40746683 40747528 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2360 17 76 Cytoplasmic Ribosomal Protein Gene Family AT3G09680 48.529 1.28e-09 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2360 K02950 - twl:119992788 163.696