Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2338 ATGAATTTGAATCTAACGAAGTTCCTGAGACGCTCGGGTGTAGATCAGAATTTTTTTGGATGTATTTGTTTCGGTAGTGTGGGTGTATTTACACATGTGTGTTTACAGCTTATGGCTTTTATTGTCATTTTAGTTGAGTTGTATCTCTCTATTGTTGATGACCAGTTTGTTTCGAAGGTTGGAATGACCTTTACCACCCTTGAAGATGCTGGAAAATTTTACAGGAACTACGCCAAGGTTGCAGGTTTTTCTACAAGAGTTCGGAGCACAAATAGGAAGGAAAACGAGATTAAGAATCAATTGATTACATGTAGTAGAGAGGGAAAATGGAACTCTAAAATATCTCCGACCAAGAAGACAAATTCGACAGCCGGTTTAAACTGTCCTGCAAGAATTTATATACACACATTGAAGGATGTTGGTGCTTGGATCATTTCAAAGATTGTGCTGGATCATTCACACCCTTGCTGTCCAAGTAAAGCAGAAATGCTCAAACAGCACAGGGAACTAAGCATGTCTATTCGTCGTACAATAGAGAATAACGAGGAGGCTGATCTCTATGAAGACCATCATATATGGGTTCCAATCTATCTGGATCACCACTTCTGGGCAGGGATGAGAAGCACACAAAGGAGCGAGAGCATGCATTCATTTTTTAACAAGTTTATTACCCATAACAGCTCGTTTATTCAATTCGTCAAACAATACGATAATTGCCTCGGAAGCAGGGAGCAAGCAGAGAGAGAATCAGATGCTGCAGATTTTCATACGGTCATACCGTGTGCAACCAAATCCTCCATTGAAGCTCAGTTTCAAGATGTGTACACTCATCAAAAGTTTAGGGAAGTCCAAGCACAATTCCAAGGAAAGGTGAATTGCATCACTAGATTAACGAATTCTGCTCTAGGCGATTTAGTATATGAGGTTGGAGAACAAGTTTCCAGCTCAATATTCAACAAGTTTGTGGTTACTTACGACTCAGTTGCAGCCGAGATAAAATGTCAATGCTTATTATTCGAGTCGAGAGGGATACTGTGTCGTCACGCACTAAGCGTGTTAAGCTTTGAACAAAGCAGCCACGACGAGCCACTGTTGGAGCCAAGAAGCAAGAGGTTTGTCCAATTGGTTTTTCGTTCGCAAAATATTTGCGAATTTGCATCCGAATCAGAGGAGCTGACTACAATTCTGCACCGTGCGTACGATAACGTCATGGCTGAGATGGAATCATTGAAAGCCAAAAGAAAGGGCACATCTTATTTATCTCACGAAGATGCCAACTTGGAATCCGTTAACGAGCTTCAAAGCCCCCCAAGGATTCAAACAAGAGGACGTCCAAAAAATAGGCTAGGTTCAAAGTTGGACAAACAGATTGCAAATGCCACAAAGAAGAAGAAAACAAAAGTTTTAAGCGAGATAAACCTGTTTTGA 1428 0.409 MNLNLTKFLRRSGVDQNFFGCICFGSVGVFTHVCLQLMAFIVILVELYLSIVDDQFVSKVGMTFTTLEDAGKFYRNYAKVAGFSTRVRSTNRKENEIKNQLITCSREGKWNSKISPTKKTNSTAGLNCPARIYIHTLKDVGAWIISKIVLDHSHPCCPSKAEMLKQHRELSMSIRRTIENNEEADLYEDHHIWVPIYLDHHFWAGMRSTQRSESMHSFFNKFITHNSSFIQFVKQYDNCLGSREQAERESDAADFHTVIPCATKSSIEAQFQDVYTHQKFREVQAQFQGKVNCITRLTNSALGDLVYEVGEQVSSSIFNKFVVTYDSVAAEIKCQCLLFESRGILCRHALSVLSFEQSSHDEPLLEPRSKRFVQLVFRSQNICEFASESEELTTILHRAYDNVMAEMESLKAKRKGTSYLSHEDANLESVNELQSPPRIQTRGRPKNRLGSKLDKQIANATKKKKTKVLSEINLF* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2338 475 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 53 169 IPR031052 GO:0006355
Amo13g2338 475 Pfam SWIM zinc finger 322 354 IPR007527 GO:0008270
Amo13g2338 475 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 185 358 IPR031052 GO:0006355
Amo13g2338 475 SMART 26again6 332 359 IPR006564 GO:0008270
Amo13g2338 475 MobiDBLite consensus disorder prediction 427 441 - -
Amo13g2338 475 PANTHER OS03G0843700 PROTEIN 53 169 - -
Amo13g2338 475 PANTHER OS03G0843700 PROTEIN 185 358 - -
Amo13g2338 475 ProSiteProfiles Zinc finger SWIM-type profile. 321 357 IPR007527 GO:0008270
Amo13g2338 475 MobiDBLite consensus disorder prediction 427 449 - -
Amo13g2338 475 Pfam FAR1 DNA-binding domain 72 157 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2338 Amo-Chr13 40286428 40289300 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo13g2338 FAR1 4.3e-13 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2338 - - adu:110280503 523.857