Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2329 ATGCTTTGTGGGTTTGCTGCAGTTTTGGTGAAGCGTTTTATGAGTAATAGATTTCTTGGAGAAGTTGTATTAGCAGAGGCAGAGCGAACGATCCCTGGATTGGATGCTTGTGGGGAAGAGAATTTTGATGGCTTCAGGGATACCGGAGATATCGATGCAACGGAATCACTGCTGGACATTGGGATGAAAACAGAGGAAGAAGAGTTGGGGGAAGAATCACCCAATGAAGAGCACTGTGAGCAGAACAGCAATGCTGAACATGTAGTGTTTGGTCGTGCACATATATTGGAGATGGAGTTCGCTAACCCGGATGAAGTGTGTCGTTTTTATGAGCAATATAGTCGAGCAAAGGGTTTTGGCATGCGACAAGGGAAGAAACTGAAGAATAGAAATGGTGAAATCGTGCGATACACGTATTTGTGCAACAGAGAAGGATTTAGAGATAGAAAATGGCTTGAAGTGAAGGATCGGAAGAGGGAGCACAAGGTTGTTACCCGCTGTGGATGTCAAGCAGAGATGAGGATAAAGCGAAAAGCCGAAAGCAACAATTGGTATGTGTGTCGTTTTGTTGATGAGCATAACCACGACCTTCTCCCGGCAAAGTTTGTGTCATACCTGCCAGCATATAGGAAATTATCAGATGTTGATAGAGCCCACATGGACAGTTTAAGGCAGGTTGGAATTTCAATTCCCAAAATTTACGAGTCTATTACTGCTCAGGCTGGGGGTTTTAACCTAGTTACGTTCACAAAGAGAGATATGACGACATCACAATGTGAGTCACTGCATGCAAAGATGGGGAGGTTTGTGGAGAGGCGATACAGAATATTGGATTTCGTGACGAACTTCCAACGGTGTGTTGATTTCTTGATAGATAATGAGGAAGAGCTTGACTTCAGGTCATTGTATGGGAGCCCGATTCTTCAAACTCAGTTCCCGGGGCTAGAGAAGTCTGGTGCATTGAACTACACGAGGGAAATATTTTTGCGTTTTAGAGAGGCGCTAAAAAGAAATGTTCGGGTTAGATTTAGAGATAGAAAATGGCTTGAAGTGAAGGATCGGAAGAGGGAGCACAAGGTTGTTACCCGCTGTGGATGTCAAGCAGAGATGAGGATAAAGCGAAAAGCCGAAAGCAACAATTGGTATGTGTGTCGTTTTGTTGATGAGCATAACCACGACCTTCTCCCGGCAAAGTTTGTGTCATACCTGCCAGCATATAGGAAATTATCAGATGTTGATAGAGCCCACATGGACAGTTTAAGGCAGGTTGGAATTTCAATTCCCAAAATTTACGAGTCTATTACTGCTCAGGCTGGGGGTTTTAACCTAGTTACGTTCACAAAGAGAGATATGACGACATCACAATGTGAGTCACTGCATGCAAAGATGGGGAGGTTTGTGGAGAGGCGATACAGAATATTGGATTTCGTGACGAACTTCCAACGGTGTGTTGATTTCTTGATAGATAATGAGGAAGAGCTTGACTTCAGGTCATTGTATGGGAGCCCGATTCTTCAAACTCAGTTCCCGGGGCTAGAGAAGTCTGGTGCATTGAACTACACGAGGGAAATATTTTTGCGTTTTAGAGAGGCGCTAAAAAGAAATGTTCGGGTTAGTATCGTGGAGTGCAACAAATTGGAGGATCGGAGAGTTTATGTGACACAAAAGTATCGCAGGCCGCTATTCAGGTGGACTGTTGGTCACCACTTTAGGATGGATTCCTTTTTTTGTAGTTGTATGAGGATAGAGTCGTTTGGACTACCTTGCGTTCACATACTTGCAATGTTGGTTCAGTTAGACGTAGGTTCTCTTCTAGAAAGCCTGGTGTTGCAACGCTGGTCGAAGACGGCCAAAGTTGAGCTCGAGGGCCCTTCCATCATGAATGAAGAGGGTGAAGCGAATGAGGTATATAGGAGCTGCATGGGTGCTTTCCTACAACATTTTAAGCGGTTGGCAAGAGTTGCGTGTATGCGAGAGAATAATTTCAAGAGTTGCTTGGATAGGATAGTTGAGGAAACTAATGTGTTGGAAATGAAGAATGGTGTTGGGACCGCTGCCAATGGACTGCCGCTGGTGCCCAAGATGGAGTAG 2091 0.4452 MLCGFAAVLVKRFMSNRFLGEVVLAEAERTIPGLDACGEENFDGFRDTGDIDATESLLDIGMKTEEEELGEESPNEEHCEQNSNAEHVVFGRAHILEMEFANPDEVCRFYEQYSRAKGFGMRQGKKLKNRNGEIVRYTYLCNREGFRDRKWLEVKDRKREHKVVTRCGCQAEMRIKRKAESNNWYVCRFVDEHNHDLLPAKFVSYLPAYRKLSDVDRAHMDSLRQVGISIPKIYESITAQAGGFNLVTFTKRDMTTSQCESLHAKMGRFVERRYRILDFVTNFQRCVDFLIDNEEELDFRSLYGSPILQTQFPGLEKSGALNYTREIFLRFREALKRNVRVRFRDRKWLEVKDRKREHKVVTRCGCQAEMRIKRKAESNNWYVCRFVDEHNHDLLPAKFVSYLPAYRKLSDVDRAHMDSLRQVGISIPKIYESITAQAGGFNLVTFTKRDMTTSQCESLHAKMGRFVERRYRILDFVTNFQRCVDFLIDNEEELDFRSLYGSPILQTQFPGLEKSGALNYTREIFLRFREALKRNVRVSIVECNKLEDRRVYVTQKYRRPLFRWTVGHHFRMDSFFCSCMRIESFGLPCVHILAMLVQLDVGSLLESLVLQRWSKTAKVELEGPSIMNEEGEANEVYRSCMGAFLQHFKRLARVACMRENNFKSCLDRIVEETNVLEMKNGVGTAANGLPLVPKME* 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2329 696 PANTHER OS02G0262500 PROTEIN 94 251 - -
Amo13g2329 696 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 67 213 IPR031052 GO:0006355
Amo13g2329 696 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 455 675 IPR031052 GO:0006355
Amo13g2329 696 Pfam FAR1 DNA-binding domain 108 199 IPR004330 -
Amo13g2329 696 Pfam FAR1 DNA-binding domain 353 396 IPR004330 -
Amo13g2329 696 PANTHER OS02G0262500 PROTEIN 455 675 - -
Amo13g2329 696 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 67 213 - -
Amo13g2329 696 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 354 410 - -
Amo13g2329 696 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 354 410 IPR031052 GO:0006355
Amo13g2329 696 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 347 447 IPR031052 GO:0006355
Amo13g2329 696 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 445 671 IPR031052 GO:0006355
Amo13g2329 696 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 94 251 IPR031052 GO:0006355
Amo13g2329 696 Coils Coil 529 549 - -
Amo13g2329 696 PANTHER OS02G0262500 PROTEIN 347 447 - -
Amo13g2329 696 ProSiteProfiles Zinc finger SWIM-type profile. 562 600 IPR007527 GO:0008270
Amo13g2329 696 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 445 671 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2329 Amo-Chr13 40048395 40062285 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo13g2329 FAR1 2.5e-20 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2329 - - aip:107611673 452.595