LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo13g2303	ATGGGAGCCCCTTTCACGTTCACACTTGGACAAGGGCAAGTAATTAAAGGATGGGATGAAGGTATTAGAAGCATGAAGAAAGGTGAAAATGCCCTTTTCACCATCCCACCTGAGCTAGCTTATGGTGAATCCGGTTCTCCTCCCACAATTCTGCCCAAAGCAACTCTTCAATTTGATGTTGAGCTGTTGTCTTGGACTAGTGTGAAGGACATATGTAAGGATGGTGGTTTGTTTAAGAAGATACTTGTTGAGGGAGAGAAATGGGAGAACCCTAAGGATCCTGATGAAGTTCTGGTTAATTATGAGGCACGCCTTGAAGATGGAACACTTGTAAAGAAATCTGATGGGGTAGAGTTCACAGTAGAAGACGGTCACTTTTACCCTGCATTGTCAAAGGCCATCAAAACAATGAAGAAGGGACAAAAAGATAAGGAATCTTGGGACATAGAAACTCCAGAGAAAATTGAAGCTGCTGGTAAGAAGAAAGAAGAAGGGAATGCACTGTTTAGAGCTGGTAAATATGCAAAAGCTTCTAAAAGATATGAGAAGGCTATTAAGTTCATAGAATATGATACCAACTTCAGCATTAAAGAGAAGAAGAGTGCCAAGGACTTGAAGATTGCTTGCAATTTGAATGATGCAGCTTGCAAGTTGAAGTTGAAAGATTATAAACAAGCAGAGAAATTGTGTACAAAGGTTTTGGACCTTGAGAGCACAAATGTGAAAGCACTCTATAGAAGAGCACAAGCATATATCCAGTTAACTGACTTGGATTTGGCAGAATTTGATATCAAGAAAGCACTTGAGATTGACCCTAATAACAGAATTATCCTATTAACATTCTTCATTGATTTGTCAACTACAGCTTCAGTTGGATTGCCAGTAATGCATAATAGTAATCTGTACTCTGCATTATTATCGGTTTCTGATGATGATGATAGCAAGAAGGAGAGCATCACCGATCTTATTAATGGTAAGTCTAATTATAAGTCCCAAGGAGAAAAGGCCATTCATCTCATACCCTTTGTGCTTTTCCTTTGTGCTTTCGTTCTTTGGATTTTCTCTCATCCCTGA	1074	0.392	MGAPFTFTLGQGQVIKGWDEGIRSMKKGENALFTIPPELAYGESGSPPTILPKATLQFDVELLSWTSVKDICKDGGLFKKILVEGEKWENPKDPDEVLVNYEARLEDGTLVKKSDGVEFTVEDGHFYPALSKAIKTMKKGQKDKESWDIETPEKIEAAGKKKEEGNALFRAGKYAKASKRYEKAIKFIEYDTNFSIKEKKSAKDLKIACNLNDAACKLKLKDYKQAEKLCTKVLDLESTNVKALYRRAQAYIQLTDLDLAEFDIKKALEIDPNNRIILLTFFIDLSTTASVGLPVMHNSNLYSALLSVSDDDDSKKESITDLINGKSNYKSQGEKAIHLIPFVLFLCAFVLWIFSHP*	358

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo13g2303	357	PANTHER	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE	2	142	-	-
	Amo13g2303	357	Pfam	FKBP-type peptidyl-prolyl cis-trans isomerase	89	143	IPR001179	GO:0003755
	Amo13g2303	357	Pfam	FKBP-type peptidyl-prolyl cis-trans isomerase	2	63	IPR001179	GO:0003755
	Amo13g2303	357	SUPERFAMILY	FKBP-like	4	71	-	-
	Amo13g2303	357	Gene3D	-	2	66	IPR046357	GO:0003755
	Amo13g2303	357	Gene3D	-	67	148	IPR046357	GO:0003755
	Amo13g2303	357	ProSiteProfiles	FKBP-type peptidyl-prolyl cis-trans isomerase domain profile.	94	142	IPR001179	GO:0003755
	Amo13g2303	357	Pfam	Tetratricopeptide repeat	241	274	IPR001440	GO:0005515
	Amo13g2303	357	PANTHER	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE	141	279	-	-
	Amo13g2303	357	Gene3D	Tetratricopeptide repeat domain	149	281	IPR011990	GO:0005515
	Amo13g2303	357	ProSiteProfiles	FKBP-type peptidyl-prolyl cis-trans isomerase domain profile.	1	66	IPR001179	GO:0003755
	Amo13g2303	357	PANTHER	PEPTIDYLPROLYL ISOMERASE	141	279	-	-
	Amo13g2303	357	SUPERFAMILY	TPR-like	154	278	IPR011990	GO:0005515
	Amo13g2303	357	SUPERFAMILY	FKBP-like	70	142	-	-
	Amo13g2303	357	ProSiteProfiles	TPR repeat profile.	241	274	IPR019734	GO:0005515
	Amo13g2303	357	PANTHER	PEPTIDYLPROLYL ISOMERASE	2	142	-	-
	Amo13g2303	357	SMART	tpr_5	241	274	IPR019734	GO:0005515
	Amo13g2303	357	SMART	tpr_5	158	191	IPR019734	GO:0005515
	Amo13g2303	357	SMART	tpr_5	207	240	IPR019734	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo13g2303	Amo-Chr13	39674058	39676968	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo13g2303	4	65	Calmodulin-binding Proteins	AT3G25230	40.000	8.05e-08	52.0

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo13g2303	K09571		-	psom:113282830	275.789