Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2276 ATGGAAGATAAAAATGGGAAAAAGAGAAGGCGCAAAGATAATAGAGTGGTTCATGAAGTAGAGGTTTCACCATTGCATGAATCAAACGGCTTTCCAAGGGACTCTCCCTTAGCAATTGACGTGTCAACAGTTATTCTAAAACTATCAGAGAATGGTGATCTTCAAAGGATTCATGACAAATGGCTAACAAAAAAAATTATATACAAGATGATCAAAGTTTGGGTTCTTGTCATTGTGATGTTCTACAATGGTTTTCCCTCAAAAGGGACAAGCAATAGTAATAATGTTACAAGGCCAAGTACAGTTAATATTGGAGCAATTTTTTCTTTTAATTCAACTATTGGAGGAGTGGCTAAAATTGCAATACAAGCAGCAGTAGATGATATAAATTCCAATGCAACCATTCTCAATGGAACTAAGTTTAATATCTCAATGCAGGACACAAAATTCTCCCCTGGATTTCTAGGAATTATTGACTCATTAATATTGATGGAGAAAGGCACTGTGGCAATAATTGGTCCACAGTACTCAGAAATGGCACATAGTGATCTTTATCAAATGTCTGCAGTGGCAGATATTGTTAGTCACTTCCAATGGAGAGATGTGATTGCAATCTTCATTGATGATGATCATGGAAGAAATGGAGTCACTGCATTAGGTGATAAGCTTGCTGAAAAACGTTGCAAGATATCATATAAAGCACCCATTAAGCCAAATAATATTAGTCAAGAAGAAATAACCAATGCATTGATTAAAGTAGCTTTGATGGAATCTAAGGTAATAGTCCTACATTTGTTACCTGATTTTGGCTTAAGAGTACTTAAGATTGCTCAATCACTTGGCATGATCAAAAGTGGTTATGCATGGATAGTAACTGATTGGCTTTCTACAATATTAGATTCAAACCCTTCATTGTTATTGTCTACAAGCTCTACCATGAATGATATGCAAGGTGTTATCACCTTGAGAATGTACACACCAAATTCAGAAATTAAGAGAAACTTTATGTCTAGGTGGAAGACCAACCTAACCCATGTAAATGATGATCATCATTTGGGATTGAACATATTTGGTCTATATGCTTATGACACTGTTTGGACCTTAGCTTATGCACTTGATGCATTCTTTAGAAGTGGTGGAACTTTGAAATTTTCAAATGATTCAAGTCTAAACACTTTAAGGGGTGATAGTGATACCCTTCATCTTGATACTATGGGAGTGTTTCTTAATGGTGACATGTTACTTCAGAAGATTCTAGAAGTTAATCGAACCGGTTTAACCGGCCGAACAGAGTTTGCCCAAGATGGAAACCTAATACAATCATCATATGAGATCATTAATGTGATTGGAACTGGGGTTAGGAGGATTGGATTTTGGTCTAATTCTTTTGGCCTTCACACTGGTGAACAAGTTTCAAATGATGCAAATTCAAGTGAAGGGCTTTATAGTGTGATATGGCCTGGCCAAACAACACAAACACCTAGAGGTTGGGTTTTTGCTAGCAATGGAAGACATTTGAGAATTGGAGTACCACTTAGGGTTACCTACCATGAGTTTGTGTCAAGAATTGAAGGCACTGACATGTTGTTTGGTGGTTATTGTATTGATGTGTTTATTGCTGCTCTAAATGTGTTGCCTTATACAATTCCATACAAGTTTGTTCCATTTGGTGATGGTAGAACCGATCCCGTGGTGTCAGAACTTCTAGAACAAATCACAATTGGTGCCTTTGATGCCGTTATTGGGGATATTACTATTACTACAAACAGAAGTAAGATAGTGGATTTCACTCAGCCATATATAGAGTCAGGGTTAGTGGTTGTGGCACCTATCAAGGAATTGAAATCAAGTGCTTGGGCCTTTCTTATACCATTYACTCCAATGATGTGGTTTGTCACAGGAATGCTTTTTCTAATTGTTGGAGTTGTTGTGTGGATTTTAGAGCGGCCCTTTAATGATGACTTTAGAGGACCAATTAGAAGACAACTAAAAACCGTTAGCACCCTTGGTCGCTTAGTCCTAATCATATGGTTGTTTGTGGTTCTAATACTAAGCTCTAGCTACACTGCAAGCCTAACATCAATTCTCACAGTGGAAAAACTCTCTTCCCCAGTGAAAGGAATTGAAAGCTTAGTGRTCAACAATGACCGAATTGGTATCATGAGTGGCACATATGCTGARAATTATCTTAGTGAGGTGTTTAACATACATAGATCAAGGCTTGTTCCTTTCAATTCTCTATCTGAATTTGAGAAGGCTTTGAAGGATGGACAAGACAATGGTGGTGTTGCTGCTATCATAGCTGAGCGTGCATACATGGAATTGTTCCTATCAACTAGATGTCAATTTGGTATTGTTGGRCAAGAATTCACCAAAATGGGATGGGGCTTTGCCTTTCCAAGGGACTCTCCCTTAGCAATTGACATGTCAACAGCTATTCTAAAACTATCAGAGAGGATTCATGAACAAATGGCAACTCCAAGAATGATTAGAAATTGGGGTGTTGTGGTGTTGATTGTTCTTCTCTCCAATGGGTTCTGTTCAAATGGGGTTGGCTTGGATGATATTGATATTGATAATAATAATCACAGTAATAATACCACAATTCCTGATGTTGTAAATATCGGGGTTCTTTTCTCTTTCAATACAAGTGTTGGCAAAATTGTGAAAATCGCCGTAGAAGCCGCGGTTAAAGATGTAAATTCTGATCCATCAATTCTTGGTAAAACTCAGCTCAAGCTCTCACTTCAAGAAGATTCCAAATATAGAGGGTTCTTGAGCATTGCTGAGGCATTGCAGCTCATGGCAACACACACTGTGGCCATAATTGGCCCACAGACCTCCACAACAGCTCATGTCATATCTCACATCGCGAACGAGCTTCAAGTTCCCCTGCTGTCGTTTACAGCCACTGACCCCACCCTTTCTTCGCTTCAGTTCCCATTCTTCATTCGGACATCTTTTAATGATATGTATCAGATGACTGCAATAGCAGATCTTGTTAACTATTATGGTTGGAGGGAGGTTATTGCAGTCTATGGTGATGATGATCATGGGAGGAATGGAATTGGTGCCTTAGGGGACAAGCTAGCTGAGAGACGCTGCAAGATCTCGTTTAAAGCTCCTATGAGTCCTGAGGCAACCAGGGAGGAGATCACTGATGTGCTTGTTCAGGTAGCTCTGGCTGAATCGCGGGTTATAGTCCTTCACACAAGTACTACTTGGGGGCCGAAAGTGCTAAATGTGGCGAAATCTCTTGGAATGATGGAAAATGGTTATGTCTGGATAGCCACAACTTTTCTGTCTACCGGGATAGATATAAGTTCTCCACTTTCTTTGAGTGTAATGGATGACATTCAAGGAGTTATTGCGCTGCGAATGTATGTGCCGGATTCAAAGCTCAAGAGATCTTTCATTTCGAGGTGGAAAAACTGGACTAATGGCTCCCTTGGATTGAGTACTTATGCTATCTTTGCATATGATACTGTCTATGTTCTTGCTCATGCGCTTGCTGCATTTTTTAAACAAGGGAACCGCATTACCTTTTCATCTGATTCAAAGACATCTCTAATACATGGTGACAACATGCATCTTGATGCTGTGAAGATATTCAACGAAGGAAAACTGCTGCGAAAAAGTATCTACAAGGTTAACATGACCGGTGTAACAGGTCACTTCAAGTATACATCTGATGGAAACCTTGCAAATCCGGCATATGAAATCATCAATGTGGTTGGAACAGGGACTAAGAGGATTGGTTATTGGTCTAATCACTCTGGACTATCATCTGTAAGTCCTGAAGAACTTCATTCAAAGCCGGCTAGACATTCAAGTTCAAGTCAAAAGCTACTATCTGTGATTTGGCCAGGGGACACAACACAGAAACCTCGCGGTTGGGTTTTTCCAAACAATGGAAGGATGCTAAAAATTGGAGTACCAAAAAGGATCAGTTACCGCGAATTCGTCTCACAAGTAAAAGGCACTGATATGTTCAAGGGGTTCTGCATTGATGTCTTTCTTTCTGCAGTGAACTTGTTGCCTTATGCTGTCCCCTATAAGTTTATTTCGTACGGAGACGGTCACAGCAATCCTAGTAACACTGAACTTGTCCGTCTGATCACGACCGGTCCATTCATCGAGTCCGGTCTAGTGGTAGTAGCATCAGTGAAGAAGACAGACTCAAATGCTTGGGCATTCTTGATGCCATTTACACCAATGATGTGGATTGTCACAGCTATCTTCTTCCTAGTTGTTGGTGCTGTTGTCTGGATTTTAGAGCATAGGCTCAATGATGATTTTAGGGGACCTCCCAAAAAACAGGTAGCCACAATTTTGTGGTTCAGTTTCTCAACCATGTTTTTTGCACATAGGGAAAACACAGTGAGCACTCTCGGTCGATTCGTGCTGCTTATATGGTTATTCGTAGTTCTCATAATCAACTCGAGTTATACAGCAAGCTTGACTTCAATCCTCACAGTGCAACAACTTTCTTCACCAATTAAGGGCATTGAAAGTTTGATAAACAACAATGAGCCTATTGGCTACTTGCAGGGTTCTTTCACTAAAGGTTATTTAGTCAACGAAATTGGCATCGATGCGTCGAGACTTGTAGCTCTAACAACACCAGAAGAATCTGCCACTGCTCTGGACAAAGGTCCCCATAAAGGTGGCATCGCTGCATATGTCGACGAACGCGCATACATAGAGCTGTTCCTTTCAAGCCGCTGCGATTTCAGCGTTGTTGGTCAAGAGTTCACCAGAAATGGTTGGGGATTTGCCTTTCCACGAGACTCGCCATTAGCGGTTGACCTGTCAACAGCCATTTTGGAGTTGGCTGAGAACGGCGACCTTCAACGGATCCACGACAAATGGCTTTTGCGCAGTGCTTGCCTGTCGCAAGGTGCGAAGCTCGAAGTGGACAGACTCAAGCTGAGGAGCTTCTGGGGTCTCTACCTACTCTGTGGCTTGGCATGTTTGATTGCTCTCTTTGTATATCTGATTCAAACCATGAAGCAATACAAGAAGCACTACACCGAAGACGACAAGTCGTCGTCCGGTCTAAAGTCCACGCCGAAGACACAGTTAAGAGCCGCTCCAAGAGAAGGAAAACGGAGATGGCATCATTCAAAAGCACAAGTGAGGTTGGATCATCCAATAATGGATATTCAGAATCATCTTCTCAGAGAATTGAGTGTACTAATAATGAGTCATGACAAACTTGTTTTCTTTGGTCACAGAACTGGACTAATCTGTCCGAAATGTAAATTCTCGGGTTTATTTGTCACTTTACTCTTAAAAAATTTAATGTATTTGGTTCTTGAAATACCTATCAAAACATTGTTCTTCTTTGCAATACTTGGATATAACTTTATACACTTCGATTAA 5385 0.4045 MEDKNGKKRRRKDNRVVHEVEVSPLHESNGFPRDSPLAIDVSTVILKLSENGDLQRIHDKWLTKKIIYKMIKVWVLVIVMFYNGFPSKGTSNSNNVTRPSTVNIGAIFSFNSTIGGVAKIAIQAAVDDINSNATILNGTKFNISMQDTKFSPGFLGIIDSLILMEKGTVAIIGPQYSEMAHSDLYQMSAVADIVSHFQWRDVIAIFIDDDHGRNGVTALGDKLAEKRCKISYKAPIKPNNISQEEITNALIKVALMESKVIVLHLLPDFGLRVLKIAQSLGMIKSGYAWIVTDWLSTILDSNPSLLLSTSSTMNDMQGVITLRMYTPNSEIKRNFMSRWKTNLTHVNDDHHLGLNIFGLYAYDTVWTLAYALDAFFRSGGTLKFSNDSSLNTLRGDSDTLHLDTMGVFLNGDMLLQKILEVNRTGLTGRTEFAQDGNLIQSSYEIINVIGTGVRRIGFWSNSFGLHTGEQVSNDANSSEGLYSVIWPGQTTQTPRGWVFASNGRHLRIGVPLRVTYHEFVSRIEGTDMLFGGYCIDVFIAALNVLPYTIPYKFVPFGDGRTDPVVSELLEQITIGAFDAVIGDITITTNRSKIVDFTQPYIESGLVVVAPIKELKSSAWAFLIPFTPMMWFVTGMLFLIVGVVVWILERPFNDDFRGPIRRQLKTVSTLGRLVLIIWLFVVLILSSSYTASLTSILTVEKLSSPVKGIESLVXNNDRIGIMSGTYAENYLSEVFNIHRSRLVPFNSLSEFEKALKDGQDNGGVAAIIAERAYMELFLSTRCQFGIVGQEFTKMGWGFAFPRDSPLAIDMSTAILKLSERIHEQMATPRMIRNWGVVVLIVLLSNGFCSNGVGLDDIDIDNNNHSNNTTIPDVVNIGVLFSFNTSVGKIVKIAVEAAVKDVNSDPSILGKTQLKLSLQEDSKYRGFLSIAEALQLMATHTVAIIGPQTSTTAHVISHIANELQVPLLSFTATDPTLSSLQFPFFIRTSFNDMYQMTAIADLVNYYGWREVIAVYGDDDHGRNGIGALGDKLAERRCKISFKAPMSPEATREEITDVLVQVALAESRVIVLHTSTTWGPKVLNVAKSLGMMENGYVWIATTFLSTGIDISSPLSLSVMDDIQGVIALRMYVPDSKLKRSFISRWKNWTNGSLGLSTYAIFAYDTVYVLAHALAAFFKQGNRITFSSDSKTSLIHGDNMHLDAVKIFNEGKLLRKSIYKVNMTGVTGHFKYTSDGNLANPAYEIINVVGTGTKRIGYWSNHSGLSSVSPEELHSKPARHSSSSQKLLSVIWPGDTTQKPRGWVFPNNGRMLKIGVPKRISYREFVSQVKGTDMFKGFCIDVFLSAVNLLPYAVPYKFISYGDGHSNPSNTELVRLITTGPFIESGLVVVASVKKTDSNAWAFLMPFTPMMWIVTAIFFLVVGAVVWILEHRLNDDFRGPPKKQVATILWFSFSTMFFAHRENTVSTLGRFVLLIWLFVVLIINSSYTASLTSILTVQQLSSPIKGIESLINNNEPIGYLQGSFTKGYLVNEIGIDASRLVALTTPEESATALDKGPHKGGIAAYVDERAYIELFLSSRCDFSVVGQEFTRNGWGFAFPRDSPLAVDLSTAILELAENGDLQRIHDKWLLRSACLSQGAKLEVDRLKLRSFWGLYLLCGLACLIALFVYLIQTMKQYKKHYTEDDKSSSGLKSTPKTQLRAAPREGKRRWHHSKAQVRLDHPIMDIQNHLLRELSVLIMSHDKLVFFGHRTGLICPKCKFSGLFVTLLLKNLMYLVLEIPIKTLFFFAILGYNFIHFD* 1795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2276 1794 Pfam Receptor family ligand binding region 179 450 IPR001828 -
Amo13g2276 1794 Pfam Receptor family ligand binding region 890 1246 IPR001828 -
Amo13g2276 1794 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 180 819 - -
Amo13g2276 1794 SMART GluR_14 1309 1627 IPR001320 GO:0015276|GO:0016020
Amo13g2276 1794 SMART GluR_14 505 827 IPR001320 GO:0015276|GO:0016020
Amo13g2276 1794 SUPERFAMILY Periplasmic binding protein-like I 869 1300 IPR028082 -
Amo13g2276 1794 Gene3D - 510 635 - -
Amo13g2276 1794 Gene3D - 989 1261 - -
Amo13g2276 1794 Gene3D - 403 509 - -
Amo13g2276 1794 Pfam Bacterial extracellular solute-binding proteins, family 3 1483 1625 IPR001638 -
Amo13g2276 1794 Pfam Bacterial extracellular solute-binding proteins, family 3 564 818 IPR001638 -
Amo13g2276 1794 Gene3D - 185 353 - -
Amo13g2276 1794 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 857 1378 - -
Amo13g2276 1794 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1375 1682 - -
Amo13g2276 1794 Gene3D - 657 738 - -
Amo13g2276 1794 Gene3D - 1391 1520 - -
Amo13g2276 1794 Gene3D - 1568 1632 - -
Amo13g2276 1794 Gene3D - 97 182 - -
Amo13g2276 1794 SUPERFAMILY Periplasmic binding protein-like II 1283 1627 - -
Amo13g2276 1794 Pfam Ligand-gated ion channel 663 715 IPR001320 GO:0015276|GO:0016020
Amo13g2276 1794 Gene3D - 891 1236 - -
Amo13g2276 1794 PANTHER GLUTAMATE RECEPTOR 1375 1682 - -
Amo13g2276 1794 CDD GluR_Plant 506 818 - -
Amo13g2276 1794 PANTHER GLUTAMATE RECEPTOR 180 819 - -
Amo13g2276 1794 PANTHER GLUTAMATE RECEPTOR 80 181 - -
Amo13g2276 1794 SUPERFAMILY Periplasmic binding protein-like II 482 818 - -
Amo13g2276 1794 CDD PBP1_GABAb_receptor_plant 874 1264 IPR044440 -
Amo13g2276 1794 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 80 181 - -
Amo13g2276 1794 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 31 63 - -
Amo13g2276 1794 PANTHER GLUTAMATE RECEPTOR 857 1378 - -
Amo13g2276 1794 PANTHER GLUTAMATE RECEPTOR 31 63 - -
Amo13g2276 1794 SUPERFAMILY Periplasmic binding protein-like I 98 497 IPR028082 -
Amo13g2276 1794 Pfam Ligand-gated ion channel 1407 1658 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2276 Amo-Chr13 38817469 38856774 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2276 74 818 Ion Channels AT3G51480 51.625 0.0 806
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2276 K05387 - gmx:100788917 1392.48