Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2274 ATGGCTCTAGGAACTAATTTCAAGCCTCAAATAGCTACATTATTGGATCAAAATGGTGAAAGAATTATTGGGGATTTAAATCACAATATTAGAAAACCTCCAAAAGATCATTCAATTATTCGCCATTGCAGCAGTAACGTATGGTTGGCTAAATCGGAATTAGACATTGGGATTGAAGACTTGAAAGCAAATCCAGAAGAGAAATCAAAGTTTTCACCAACATTGCGATTTGGAAGTTGTTCTGAGAAAGGACCAAAGCAGTTCATGGAAGATGAGTTTATTTGTGTTGATATCATTCACGAATATTCCAGTGCTGCCATGCCTTCTCCAGCAGGATTTTATGGGGTATTTGATGGGCATGGAGGAATTGATGCGGCATCATTTACCAAAATAAACATTCTTAAGCTAATAGTTGAAGATTCACATTTTCCATCCAACATTAAGAAAGCTATTAAGAGTGCATTTGTGAAAGTGGATCATGCATTTGCAGATACTACTTCACTTGATAGTTCTTCAGGCACCACAGCAATTGTTGCCCTTATTTTGGAAAGGGACTTGATAGTTGCCAATGTGGGGGATTCTCGTGCCGTAATGGGAAAAAGAGGTAAAGCCATAGAACTTTCCAAAGATCATAAGCCAAACAGCACTTCTGAAAGATTAAGAATTGAGAAACTAGGTGGTGTGATCTATGATGGATACCTCAATGGACAACTATCAGTGGCACGTGCTCTTGGGGATTGGCACATCAAAGGTTACAAAGGTAATTCAATGTGCCCATTAAGCTCAGAGCCAGAATTAGAAGAGGTTGTATTAACAGAAGAAGATGAGTTCTTAATAATGGGGTGTGATGGATTATGGGATGTGATGAGTAGCCAATATGCTGTGACAATGGTGAGAAAAGAGCTGATGAAACACAATGATCCAATGGAATGTGCAAGAGCTCTTGTTTCTGAAGCACTTCAACGCAATGCATGTGACAATCTCACTGTTTTGGTCATTTGTTTCTCCATGGATCCACCTCCTAAGATTGAAATCATCTCCAGGTTACATAAGAGGAGGAGTATTTCAGCTGAAGCCATTGACGTTCTCAAGGGTTTGATCAATGCCACAAGTTAA 1116 0.3916 MALGTNFKPQIATLLDQNGERIIGDLNHNIRKPPKDHSIIRHCSSNVWLAKSELDIGIEDLKANPEEKSKFSPTLRFGSCSEKGPKQFMEDEFICVDIIHEYSSAAMPSPAGFYGVFDGHGGIDAASFTKINILKLIVEDSHFPSNIKKAIKSAFVKVDHAFADTTSLDSSSGTTAIVALILERDLIVANVGDSRAVMGKRGKAIELSKDHKPNSTSERLRIEKLGGVIYDGYLNGQLSVARALGDWHIKGYKGNSMCPLSSEPELEEVVLTEEDEFLIMGCDGLWDVMSSQYAVTMVRKELMKHNDPMECARALVSEALQRNACDNLTVLVICFSMDPPPKIEIISRLHKRRSISAEAIDVLKGLINATS* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2274 371 PANTHER PROTEIN PHOSPHATASE 2C 47-RELATED 24 352 - -
Amo13g2274 371 SUPERFAMILY PP2C-like 68 335 IPR036457 -
Amo13g2274 371 CDD PP2Cc 76 335 IPR001932 -
Amo13g2274 371 ProSitePatterns PPM-type phosphatase domain signature. 113 121 IPR000222 GO:0043169
Amo13g2274 371 Pfam Protein phosphatase 2C 76 327 IPR001932 -
Amo13g2274 371 PANTHER PROTEIN PHOSPHATASE 2C 24 352 IPR015655 GO:0004722|GO:0006470
Amo13g2274 371 SMART PP2C_4 66 333 IPR001932 -
Amo13g2274 371 ProSiteProfiles PPM-type phosphatase domain profile. 76 335 IPR001932 -
Amo13g2274 371 SMART PP2C_SIG_2 91 335 IPR001932 -
Amo13g2274 371 Gene3D - 58 338 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2274 Amo-Chr13 38800158 38806246 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2274 69 368 PP2C-type Phosphatase Gene Family AT3G51470 74.000 2.66e-166 466
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2274 K14803 - zju:107424335 487.648
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g3130 01 102811303 102813244 Amo13g2274 13 38800158 38806246 PCT
Amo13g2274 13 38800158 38806246 Amo01g3130 01 102811303 102813244 PCT