Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2266 ATGTCCACCACCACCACCACAGAGCAAGACACGTCACGTGACTCTCACACGCACTTCTACTCCACCACCGGCAACAACGTCGTCACAGACGACGACGACAGCGACCTCGATGACGATGACCAGCAGCACCACCACAACTATGGCGAAGACAAAAGAGAATTCACCCAAAGAGCATGGTGCTGCAGATCCCGCGGCAGCAGGTGGAGGCAGTGGTGGCCAACGGGTAAAGTTCTGGACCCGAGGTCGAAATGGGTCCAAGAATGGAACAGAGTGTTTCTTCTGGTGTGCGCGACTGGTCTATTCGTGGACCCGTTGTTCTTCTATGTGCTCTCTGTGAGCGACACGTGTATGTGCCTCTTCGTGGATGGTTGGTTCGCCGTAACGGTAACGGTTCTGCGCTGCATGACGGACGCACTACACGTGTGGAACATGTGGCTGCAGCTCAAGATGGCGAAGAGGATCTTTGGTTTGGGTGCTGCCGCTGCCGGCGGTGGTGGTGATGGAAGCAGCGGAGGGGTGCTGAGGGACACTAACCCCCGTACTGTAGCTGTTGGGTATCTCAAGGCTAAGACTGGATTCTTCTTTGATATCTTTGTTATCCTTCCAATACCTCAGATAGTGGTGTGGGTGGGAATCCCATCTTTGTTAGAGAAAGGGTCAGTGACATTGGTGATGACAGTGTTGCTGATAATGTTTCTGTTGCAATACCTTCCCAAAATATATCACGCAGTTTGCCATCTTCGAAGAATGCAGAACCTCTCTGGCCACATTTTTGGAACCGTTTGGTGGGGTATTGCTCTTAACATGATTGCCTATTTTGTCGCCTCTCATGCAGCAGGGGCATGTTGGTACTTGTTAGGAATCCAGAGAGCAGCAAAGTGCCTGAAAGAACAGTGTGCAAGAACAGATGGTTGTGGATCAAGGATTCTTTCATGCAAAGATGCAATATACTATGGAAGCACAAGAAGCTTGGTTAGTGACAGAGCAAGGTTGGCTTGGGCAGGGAACAGGGAAGCAAGGTCCATTTGCTTAGATGGGTCTGACAAGTATAACTATGGAGCTTATAAGTGGACTGTTCAACTTGTCACCAATGATAATCGATTGGAAAAGATACTTTTCCCTATCTTCTGGGGCCTAATGACTCTCAGCACTTTTGGTAACCTAGAGAGCACAACAGAATGGCTAGAAGTAGTTTTTAACATCATTGTCTTGACCAGTGGTCTTCTTCTTGTCACCATGTTAATTGGAAACATCAAGGTGTTTTTGCATGCAACAACATCAAAAAAGCAAGCAATGCAACTGAAGATGAGGAACATTGAATGGTGGATGAGGAAGAGGCGGCTGCCGCACGGGTTACGGCAGAGAGTGCGAACGTATGAACGGCATCGTTGGGCCGCCATGCGCGGCGTTGATGAGTGTGAGATGACCAGCAATTTGCCTGAAGGGCTAAGAAGAGACATCAAGTATCATCTTTGTTTGGATTTGGTCAAGCAGGTGCCACTATTTCAGCACATGGATGAACTTGTCCTAGAGAACATTTGTGACCGCGTGAAGTCTCTCATATTCACAAAGGGAGAAACAATAGCCAAAGAGGGAGACCCAGTCCAAAGAATGCTATTTGTAGTAAGGGGTCACCTTCAAAGCAGCCAACTTCTAAGAGATGGTGTGGAAAGTTGTTGCATGTTAGGTCCCGGAAACTTCAGCGGAGACGAACTCCTTTCGTGGTGTTTAAGGCGGCCCTTCATCGAGCGCCTTCCGCCGTCTTCATCCACTCTTGTAACACTAGAAACCACCGAGGCATTCGGCCTAGAAGCCGAGGATGTGAAATATGTTACACAGCATTTTAGATATACTTTTGTGAAGGAAAAAGTGAAAAGAAGTGCCAGGTATTATTCGCCAGGATGGCGAACATGGGCTGCCGTGGCGATTCAATTGGCGTGGAGGAGGTACAAGCATCGGTTGACTTTGACTTCCTTGTCTTTTATAATGCCAAGGAGGCCTGTGTTACGTTCCTCTTCCATGGGAGAAGACAGGCTTAGGCTCTATACAGCATTGTTAACCTCTCCAAAGCCTAATCAGGAAGATTATGACTTCTGA 2097 0.4831 MSTTTTTEQDTSRDSHTHFYSTTGNNVVTDDDDSDLDDDDQQHHHNYGEDKREFTQRAWCCRSRGSRWRQWWPTGKVLDPRSKWVQEWNRVFLLVCATGLFVDPLFFYVLSVSDTCMCLFVDGWFAVTVTVLRCMTDALHVWNMWLQLKMAKRIFGLGAAAAGGGGDGSSGGVLRDTNPRTVAVGYLKAKTGFFFDIFVILPIPQIVVWVGIPSLLEKGSVTLVMTVLLIMFLLQYLPKIYHAVCHLRRMQNLSGHIFGTVWWGIALNMIAYFVASHAAGACWYLLGIQRAAKCLKEQCARTDGCGSRILSCKDAIYYGSTRSLVSDRARLAWAGNREARSICLDGSDKYNYGAYKWTVQLVTNDNRLEKILFPIFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRRLPHGLRQRVRTYERHRWAAMRGVDECEMTSNLPEGLRRDIKYHLCLDLVKQVPLFQHMDELVLENICDRVKSLIFTKGETIAKEGDPVQRMLFVVRGHLQSSQLLRDGVESCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLVTLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSLSFIMPRRPVLRSSSMGEDRLRLYTALLTSPKPNQEDYDF* 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2266 698 Gene3D Helix hairpin bin 426 492 - -
Amo13g2266 698 Pfam Ion transport protein 88 418 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Amo13g2266 698 MobiDBLite consensus disorder prediction 1 42 - -
Amo13g2266 698 CDD CAP_ED 501 607 IPR000595 -
Amo13g2266 698 Gene3D Jelly Rolls 499 617 IPR014710 -
Amo13g2266 698 SUPERFAMILY cAMP-binding domain-like 427 615 IPR018490 -
Amo13g2266 698 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 26 695 - -
Amo13g2266 698 ProSiteProfiles cAMP/cGMP binding motif profile. 501 611 IPR000595 -
Amo13g2266 698 Pfam Cyclic nucleotide-binding domain 522 609 IPR000595 -
Amo13g2266 698 SUPERFAMILY Voltage-gated potassium channels 79 422 - -
Amo13g2266 698 MobiDBLite consensus disorder prediction 1 29 - -
Amo13g2266 698 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 26 695 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2266 Amo-Chr13 38620327 38636909 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2266 62 697 Ion Channels AT5G54250 78.459 0.0 1014
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2266 K05391 - gmx:100783341 1127.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2266 13 38620327 38636909 Amo13g2266 13 38620327 38636909 ECH