Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2246 ATGCTGTTTGTTTGGCTCTTTGTTATCTCTTTTGTTAAACTCTCCACTTCACAACATATATTGACGCCGCGTCACTTTGTCCGTGACGGCGAGACTTTGCTTTCCCGTGATGGAACATTTGAGCTTGGTTTCTTCAGCCCTGGAACTTCTACAAATCGATATCTTGGTATATGGTACAGGAATGTGTTCCCAAAAGCAGTTGTGTGGGTGGCCAACCGCGAATCACCAATCAAGAACAATTCAGGAATCTTGACCATCAACAATGAAGGAGTTCTTGTGATCCTTCTGATTCTCATCAACGGCACAAACAGCAGCAGCCCTGTTTGGTCTTCTAATGTGCCAAGCGAAGCTGTTATTAATCCAACAGCACAGCTTCTGGAGACAGGGAATCTTGTGGTGAAGAATGGAGTTAAAGATTCAAACAACAATCAGTTTCTCTGGCAGAGTTTCAACTACCCTGGCGATACGCTTACCATGCAGGGCATGAAGCTTGGATGGAACTTAATGACAGGTCAAGAAATATTTCTTTCTTCTTGGAGAAGTAAGGATGATCCAAGCAAGGGAGAATATTCATTAAAGATTGACTGTACGGGATATCCACAACTTTTTAAGTATAAAGGTTCTGAAAAAAGGTTTAGAATAGGGTCATGGAATGGAGAAAGTTTTAGTGGATATTCATCTCAGCAACTGAAACAAAATATTAGAGTAGAGTTCATCATGAATGATAAAGAAGTGTATCTAGTATTTAAAACCGTCGATAGATCAGTTACCTGGATTTATAAAGTTACATCTTCGGGCCATGGAGAGCTTTCTGCTTGGACGAGTCAATCGAATAGCCGAAAAGTCATCTCCACCGGGGAGGAAGATGAATGCGAAAATTATGCCTTGTGTGGTGTTTATTCTGTGTGCAATATGAATGGTAATTCTCCTACATGTGAATGTCTTAAAGGATTTGTTCCCAAGTTTCCAGAACAGTGGAATATGTCATATTGGTCTAATGGTTGTGTTTCAAGGACTGAATTGGATTGTGATAATAACACACATGGCTTCTTTAAGTACACAAACATGAAAGTGCCAGACACGTCTTCGTCGTGGTTTAGCAAGGCCATGAACCTTGATGAATGTCGGAAGAAGTGTCTGGAAAACTGTTCTTGTACGGCGTATGCCAATTTAGACATTCGCAGAGGAGGAACCGGTTGTCTACTCTGGTTTGGAGCTCTGGTTGACACGAGGACGTTTTCTCAATGGGGACAAGACCTTTACATCAAGGTCCCTGCTTCTCAACTCGATAATGGTCTAAGTAAAATGAAGAAGTTGGTAGAAATCATAGTTGGTGTGATTTTATTTGGATTCATAACTTGTGTCAGCATAATGATACACAGAAGACAAGGGTTGTTAAGAATAATTTACAGGAAGCATTATGAAAATATACTGAGGAAGGAAGACATTGGTCTACCAAATTTTGATCTGTCTGTCTTAGCCAAAGCCACTGACAACTTCTCAAGCAGTAACAAGCTAGGAGAAGGAGGCTTTGGACCAGTGTATAAGGGCACACTAACAAATGGGCAAGAGTTAGCTGTTAAAATGCTTTCAGAAAGGTCTGTACAAGGGATGGAGGAATTCAGAAATGAAATTCTATTGATTGCCAAACTTCAACACCGAAACCTCGTGAAGCTTCTTGGTTGTTGCATTCAAGAAGAAAAAGTAATGTTGATCTATGAATACATGCCTAACAAAAGCTTGGATCACTTTATTTTTGATGAAAATAAAAGGAAGTTGCTAGATTGGCTTACACGTTTCAACATTATTGGTGGCATTGCACGAGGACTTCTTTATCTTCATCAAGACTCTAGGCTGAGGATTATTCATAGAGATCTAAAAACTAGCAATATCTTATTAGATGCAAATATGGAACCAAAAATATCGGACTTTGGATTGGCTCGTACTATCCTAGGAGATCAAGTGGGGGCAAACACAAACAAGGTGGCCGGGACATATGGTTACATGTCTCCTGAATATGCTGTGCGTGGACATTTCTCAATGAAATCAGATGTCTTTAGTTTTGGTGTGATAGTTCTAGAGATAATAAGTGAACAGAAGAATAGAGAATTTTCAGATCCCGAGCACTGTCATAATCTTCTCGGACATGCATGGAAATTATGGACAGAAGGAAGACAGTTGGAACTGTTGGATGAAGTGTTACGCGAAGGATGCACGCCTTTTGAAGTGATTCGATGCATACACGTGGCCCTGTTATGTGTGCAACAAAAACCTCAAGATAGGCCAGATATATCATCTGTGGTTCTAATGTTAAATGGTGAGAAATTATTGCCAAAGCCAAGGATTCCTGGTTTTTATTCTGAAGGAGATGTTACAAGTGAAGGAGATGCTTTATTGACAAAATGCACACTGCTCTCGCCCAATGAAACTTCCATCACAATATTAGAGGCAAGATAG 2457 0.4013 MLFVWLFVISFVKLSTSQHILTPRHFVRDGETLLSRDGTFELGFFSPGTSTNRYLGIWYRNVFPKAVVWVANRESPIKNNSGILTINNEGVLVILLILINGTNSSSPVWSSNVPSEAVINPTAQLLETGNLVVKNGVKDSNNNQFLWQSFNYPGDTLTMQGMKLGWNLMTGQEIFLSSWRSKDDPSKGEYSLKIDCTGYPQLFKYKGSEKRFRIGSWNGESFSGYSSQQLKQNIRVEFIMNDKEVYLVFKTVDRSVTWIYKVTSSGHGELSAWTSQSNSRKVISTGEEDECENYALCGVYSVCNMNGNSPTCECLKGFVPKFPEQWNMSYWSNGCVSRTELDCDNNTHGFFKYTNMKVPDTSSSWFSKAMNLDECRKKCLENCSCTAYANLDIRRGGTGCLLWFGALVDTRTFSQWGQDLYIKVPASQLDNGLSKMKKLVEIIVGVILFGFITCVSIMIHRRQGLLRIIYRKHYENILRKEDIGLPNFDLSVLAKATDNFSSSNKLGEGGFGPVYKGTLTNGQELAVKMLSERSVQGMEEFRNEILLIAKLQHRNLVKLLGCCIQEEKVMLIYEYMPNKSLDHFIFDENKRKLLDWLTRFNIIGGIARGLLYLHQDSRLRIIHRDLKTSNILLDANMEPKISDFGLARTILGDQVGANTNKVAGTYGYMSPEYAVRGHFSMKSDVFSFGVIVLEIISEQKNREFSDPEHCHNLLGHAWKLWTEGRQLELLDEVLREGCTPFEVIRCIHVALLCVQQKPQDRPDISSVVLMLNGEKLLPKPRIPGFYSEGDVTSEGDALLTKCTLLSPNETSITILEAR* 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2246 818 SUPERFAMILY Protein kinase-like (PK-like) 484 771 IPR011009 -
Amo13g2246 818 Pfam Protein tyrosine and serine/threonine kinase 503 769 IPR001245 GO:0004672|GO:0006468
Amo13g2246 818 Gene3D Transferase(Phosphotransferase) domain 1 576 777 - -
Amo13g2246 818 ProSitePatterns Serine/Threonine protein kinases active-site signature. 621 633 IPR008271 GO:0004672|GO:0006468
Amo13g2246 818 Gene3D Hepatocyte Growth Factor 343 421 - -
Amo13g2246 818 Pfam PAN-like domain 343 410 IPR003609 -
Amo13g2246 818 PIRSF SRK 1 818 IPR024171 GO:0004674
Amo13g2246 818 SUPERFAMILY alpha-D-mannose-specific plant lectins 67 185 IPR036426 -
Amo13g2246 818 CDD PAN_AP_plant 339 425 - -
Amo13g2246 818 SMART ntp_6 345 424 IPR003609 -
Amo13g2246 818 SMART blect_4 24 153 IPR001480 -
Amo13g2246 818 ProSiteProfiles PAN/Apple domain profile. 343 425 IPR003609 -
Amo13g2246 818 Gene3D - 12 151 IPR036426 -
Amo13g2246 818 CDD B_lectin 24 153 IPR001480 -
Amo13g2246 818 ProSiteProfiles EGF-like domain profile. 287 324 IPR000742 -
Amo13g2246 818 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 22 815 - -
Amo13g2246 818 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 22 815 - -
Amo13g2246 818 ProSiteProfiles Protein kinase domain profile. 500 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g2246 818 ProSiteProfiles Bulb-type lectin domain profile. 18 146 IPR001480 -
Amo13g2246 818 Pfam D-mannose binding lectin 67 180 IPR001480 -
Amo13g2246 818 Gene3D Phosphorylase Kinase; domain 1 467 575 - -
Amo13g2246 818 CDD STKc_IRAK 506 773 - -
Amo13g2246 818 Pfam S-locus glycoprotein domain 212 322 IPR000858 GO:0048544
Amo13g2246 818 SMART serkin_6 500 771 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2246 Amo-Chr13 38358673 38362787 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2246 488 818 Receptor kinase-like Gene Family AT4G23140 54.386 3.33e-122 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo13g2246 PK_Tyr_Ser-Thr 4.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2246 - - gmx:100790261 1054.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2246 13 38358673 38362787 Amo13g2246 13 38358673 38362787 ECH