Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2244 ATGGACAACACCATCATGTTATCACTTATTTTCTTTCTTCCTCTCTCCTTCATACGAACCACCACTTCACTAGGTAGTTTTACTAGTTTAGCTCTGAATCAATCTCTTCAAGACGGCGAGACCTTAGTCTCTTCAGGTGGAACATTTGAAGTTGGTTTCTTCAGCCCTGGAAATTCAACAAACCGATACTTAGGTATATGGTACAATAATGTGTCCCCTTTAACAGTTATATGGGTTGCCAACCGAGAAATACCACTTGAGAGCAATTCCGGAGTTTTGAAACTCAACCAAAACGGTGCACTTGTGATTCTCAATGGCACAAACAGCACAATTTGGTCCTCATCCAACAACACACCGGGGAAATCGAGTAATCCAATCGCGCAAGTCTTGGACTCGGGAAATCTTGTGTTGAAGAATACAGAAACCAAGGAGAGAAATGATTTTCTGTGGCAGAGTTTTGATTATCCAGGCGATACGTTCGTGCCGGGAGGAATGAAGATCGGATGGGACTTAGTAACTCGAAAAGAATATTTCTTATCATCTTGGAAGAGCGACGATGATCCGTCCGAAGGAGAGTATTTTCTAAGAATAGTAACAAAAGGATATCCACAGTTTTTCACATTCAAGGGATCAAAAAAGATATTCAGAGGAGGATCTTGGAATGGAGTGGGTTTTTCAGGTTATCCAACTCATCAACTGTCACAATATAGACAACGATTTCTCATGAATGATAAACAAGTGTTTTTAGAATGCGATATACTTGACAAATCAATTGTCTCAATATATAAACTAAGAGCTTCTGGCTTAGGACAAACTTATGCTTGGACTAATCAGAGTAACACCAGAAATGTCATCTCCACCGGTGTTCAAGACGAGTGCGAACGCTTCGCTTTGTGCGGTGCCAACTCTGTATGCATTCTCGATGGTAATCTTCCAACCTGTGAATGCCTGAAAGGCTATGTTCCTAAGTTTCCTGAACAATGGAATATATCGTATTGGTCTAACGGTTGTGTTGCGAGGAATGTTAAATCTGATTGTGTCAATGGAAGTAGCAGTGATGGGTTCTGGAAATATACAGAGATGAAATTGCCGGACACTTCTTTTTCATGGTTCAATGAGATCTTGAGCCTTGAGGATTGTCGAAACAAGTGTTTGGAGAATTGTTCTTGTACTTCTTATTCGAACTTGTATGTTCTTGATGGAGGGAGTGGCTGTTTACTTTGGTTTGATGATATGGTTGACATGAGGAGATTCACTCAAGGGGGACAAGATCTTTATATCAGAGTCCCTGCTTCTGAACTAGATAATGGCCGCAGAAAGAAGATGATGCTAATAATAGGAATAACAGTTGGTGGGATTATTTTTGGATTAACATGTGCCTGCGCATTGATACTCAGAAAGCGAGGGGTAGCAAGATTTATTTACAGGAAGCATTATGAAAGTATACTGAAAAAAGAAGAGATTTATCTACCAACATTTGACTTTTCAGTCATTGTTAAAGCCACTCAAAACTTCTCAAGCTGTAACAAACTAGGTGAAGGTGGTTTCGGACCAGTATACAAGGGCACATTGACAAATGGTCAAGAGTTAGCTGTGAAAAGGCTTTCGAAAAATTCTGGACAAGGATTGGAAGAGTTTAAAAATGAAGTGGTGTTGATAGCTAAACTTCAGCATCGTAATCTTGTAAAGCTTCTTGGATGCTGCATAGAGGAAGAAGACATAATGTTGATCTATGAATATATGCCCAATAAAAGCTTGGACAACTTTATTTTCGATGAAACTAGAAGGCACCTGCTGGAATGGCCTAAGCGTTTCAATATTATTTGTGGCATTGCTCGAGGACTTCTTTATCTTCATCAAGATTCTAGGTTAAGAATTATTCATAGAGATCTAAAAACCAGCAATATTCTACTTGATGCAAATCTGGATCCAAAAATATCTGATTTTGGCTTAGCTCGAACATTGTTAGGAGATCAAATTGAGGCAAATACAACTAAAGTTGCTGGAACATATGGTTATATGCCTCCTGAATATGCTGTACGTGGGCATTTCTCTACGAAATCAGACGTCTTCAGTTATGGAGTGATAGTTTTAGAGATTGTAAGTGGAAAAAAGATCAGAGAATTTTCCGATCCAGAACAGTGTCATAATCTTCTTGGATACGCATGGAGGCTATGGAGTGAAGGAAGACAATTAGAACTACTAGATGAAGCATTAGGGGAAAGGTTCACACCTTCTGAAGCAACAAAATGCATACAAGTTGGCCTACTATGCGTTCAACAAAGGCCAGAAGATAGGCCTAACATGTCATCTGTTGTTTTGATGCTAAATGGTGAAAAATTATTGCCCAATCCAAAAGTTCCTGCATTTTACATTGAAAGAGATACCATTCCTGAATTAGATGCTTTGTTGGAAAATTGCATGTCGCGAAATGAAGTTTCCATCACAGTGTTAGAAGCTAGATAA 2466 0.3909 MDNTIMLSLIFFLPLSFIRTTTSLGSFTSLALNQSLQDGETLVSSGGTFEVGFFSPGNSTNRYLGIWYNNVSPLTVIWVANREIPLESNSGVLKLNQNGALVILNGTNSTIWSSSNNTPGKSSNPIAQVLDSGNLVLKNTETKERNDFLWQSFDYPGDTFVPGGMKIGWDLVTRKEYFLSSWKSDDDPSEGEYFLRIVTKGYPQFFTFKGSKKIFRGGSWNGVGFSGYPTHQLSQYRQRFLMNDKQVFLECDILDKSIVSIYKLRASGLGQTYAWTNQSNTRNVISTGVQDECERFALCGANSVCILDGNLPTCECLKGYVPKFPEQWNISYWSNGCVARNVKSDCVNGSSSDGFWKYTEMKLPDTSFSWFNEILSLEDCRNKCLENCSCTSYSNLYVLDGGSGCLLWFDDMVDMRRFTQGGQDLYIRVPASELDNGRRKKMMLIIGITVGGIIFGLTCACALILRKRGVARFIYRKHYESILKKEEIYLPTFDFSVIVKATQNFSSCNKLGEGGFGPVYKGTLTNGQELAVKRLSKNSGQGLEEFKNEVVLIAKLQHRNLVKLLGCCIEEEDIMLIYEYMPNKSLDNFIFDETRRHLLEWPKRFNIICGIARGLLYLHQDSRLRIIHRDLKTSNILLDANLDPKISDFGLARTLLGDQIEANTTKVAGTYGYMPPEYAVRGHFSTKSDVFSYGVIVLEIVSGKKIREFSDPEQCHNLLGYAWRLWSEGRQLELLDEALGERFTPSEATKCIQVGLLCVQQRPEDRPNMSSVVLMLNGEKLLPNPKVPAFYIERDTIPELDALLENCMSRNEVSITVLEAR* 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2244 821 Pfam S-locus glycoprotein domain 215 324 IPR000858 GO:0048544
Amo13g2244 821 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 24 819 - -
Amo13g2244 821 Gene3D Hepatocyte Growth Factor 346 427 - -
Amo13g2244 821 Gene3D Transferase(Phosphotransferase) domain 1 581 782 - -
Amo13g2244 821 ProSiteProfiles Bulb-type lectin domain profile. 27 150 IPR001480 -
Amo13g2244 821 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 24 819 - -
Amo13g2244 821 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 188 IPR036426 -
Amo13g2244 821 SMART ntp_6 350 429 IPR003609 -
Amo13g2244 821 SUPERFAMILY Protein kinase-like (PK-like) 488 788 IPR011009 -
Amo13g2244 821 CDD STKc_IRAK 511 778 - -
Amo13g2244 821 CDD B_lectin 33 156 IPR001480 -
Amo13g2244 821 ProSiteProfiles Protein kinase domain profile. 505 782 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g2244 821 ProSiteProfiles EGF-like domain profile. 289 326 IPR000742 -
Amo13g2244 821 Pfam PAN-like domain 346 415 IPR003609 -
Amo13g2244 821 SMART serkin_6 505 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g2244 821 SMART blect_4 33 156 IPR001480 -
Amo13g2244 821 ProSitePatterns Serine/Threonine protein kinases active-site signature. 626 638 IPR008271 GO:0004672|GO:0006468
Amo13g2244 821 Pfam D-mannose binding lectin 75 183 IPR001480 -
Amo13g2244 821 Pfam Protein tyrosine and serine/threonine kinase 508 774 IPR001245 GO:0004672|GO:0006468
Amo13g2244 821 Gene3D Phosphorylase Kinase; domain 1 479 580 - -
Amo13g2244 821 Gene3D - 26 153 IPR036426 -
Amo13g2244 821 ProSiteProfiles PAN/Apple domain profile. 346 430 IPR003609 -
Amo13g2244 821 CDD PAN_AP_plant 342 430 - -
Amo13g2244 821 PIRSF SRK 1 821 IPR024171 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2244 Amo-Chr13 38296506 38300261 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2244 444 791 Receptor kinase-like Gene Family AT4G23190 51.821 1.56e-121 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo13g2244 PK_Tyr_Ser-Thr 9.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2244 - - gmx:100790261 1075.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2244 13 38296506 38300261 Amo13g2244 13 38296506 38300261 ECH
Amo13g2244 13 38296506 38300261 Amo18g1364 18 24952637 24956802 PCT
Amo13g2244 13 38296506 38300261 Amo08g1487 08 24334050 24338088 PCT