Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2239 ATGGCAAGCTATAACGTATTTTTTCTATGCTCCCTCTTATTCTCCTTCTCCGCCATGGTCATTAGTCTAACAACCATCACTCCAAATACATCAATTTATTACAACGAGACACTGATTTCCGCAGCTAGAATTTTCGAAGCTGGATTCCACAGCTTTGGAAATTCACAGAACCTATACTTCTGTATATGGTACATGAATATTTCACCTAGAACAATTGTTTGGGTAGCAAACAGAGACACCCCCGTGAATACCTCTGAAGCAACGTTCAAAGTCAGCAATGGAGGAAATCCAGTTCTAATTGATGGATCAGGGACCGTAATTTGGTCTTCCAATGCAACAGAAACCGCAGCGGATCCTGTTCTGTTGCTGTTAGACACAGGGAACATGGTTGTGAGGAAAGGAAATAGTAGCAGCGGGAATATTTTGTGGCAGAGTTTTGATTACCCCGGCGACACGCTACTCCCGGGGATGGTGCTTCGCGTTAATCGAGTCACCGGAGTATACAATTCTTTGAGGTCTTGGAAGAATTCAGGTGATCCTGGAAGTGGTGAATTTTTGTACCACTTAGATGGTCATGGTTTTCCACAACTGGTTATTGGAAAAGGTTCATCAACATGGTTGTATAGGATAGGTTCTTGGACCGGGTTATTCTTCAGTGGAGTTCCTTGGGAAACACTCTACAGGTACTTCAATTTTTCCTTTGTACTAAATGATCAAGAAGTTCACTTCGGATATGAGCCAAGAAACGCTTCAATTGTTTCTAGATACATGATAACACCTCTGGGAACCGTGCAACGGTTTCTATGGTCTTCTGAGACCAAAACTTGGCAGCTTTTTCTTGCTGGTCCACAGGATCAGTGTGATAATTATGGTTTGTGTGGCGAAAATTCAGAGTGCAATGTTAATAACTCTCCACAATGTGATTGCCTTGACGGTTTTGTGTTAAAGTCTGCTGGGAATTTGAACGGTGGGTGTGTTAGGAAGGTGGATCTGGATTGTGATGAGAGAGATGGGTTTGTGCCGTACAAAGGAGTGAAGTTGCCGGATACTTCTTCGTCGTGGTTCGATAAGAGCATGAACTTGCAGGAATGTGAGGAGAAGTGCTTGAAAAACTGCAGCTGCACAGCGTATGCAAGTTTAGATGTTAGAAATGGCGGAAGTGGATGCATCATTTGGTTTAATGGCCTCGTCGACATGAGGTCAGAATCTGAAGGGCAAGATATTTTCATTAGAGTGGCTGCTTCAGAATTAGGAAATTCAAGGAGTAAAGCAAACAAGAAAAAGCTAGCAGGGATTTTGGTAGGAAGTGGAATAATCATATTGGGGATCCTAATTGCTGGATATGTCATCTATGTAAGGAGAAAGAAACATGAGAAGCCAGGTGAGGACACAGGGATTAACCAGGTGAATCAGGTTCAGAAATATGAGAAGGAAGATATTGAATTACCCACATTTGATTTTTCAACCATAGCTAATGCAACTGATCACTTCTCTCCCAGTAACATACTAGGGGAAGGTGGATATGGACCTGTTTATAAGGGTGTGCTAGCAAATGGGCGAGAGGTAGCCGTGAAGCGGCTCTCATTGAAATCTGGACAGGGACCCCAGGAATTCAAAAATGAGGTTACACTGATTGCCAATCTTCAGCATAGAAATCTTGTGAAACTTCTTGGTTGTTGCATTGACAATGATGAGAGAATCCTAATCTATGAATACATGCCAAACAGAAGTTTGGACCATTTCATTTTTGATCAAACTGGAAGCAAAGTTTTGCATTGGAATATGCGTTTGCATATTATAAGTGGAATTGCTAGAGGGCTTCTTTATCTTCATCAAGATTCAAGACTAAGAATTATTCACAGAGATCTAAAGACCAGTAACATTCTCCTTGACAGTAACATGAATCCAAAAATATCAGATTTTGGATTAGCGAGGGTTTTTGGAGGTGATCGTGTAGAGGCCAACACAATAAGAGTAGTAGGAACTCATGGTTATATGCCTCCTGAGTATGCTGTTTATGGATCTTATTCAGTTAAGTCTGATGTCTTTAGCTTCGGTGTTATTGTGCTAGAGATGCTTAGTGGGAGAAAGAACAGAGAATTTTTTGAAGAGCAACATCATCATAACCTTCTTGGACATGCATGGAGATTGTGGAGTGAGGGTAGGCCATTGGAACTTATGGATAGCTTTATGAGAGATTCAGTTATTATATCAGAAGTGATAAGGTGCATTCACATAGGGCTATTGTGTGTGCAAGAGAGGCCAGATGATAGGCCGGACATGTCTTCTGTTGTTCTAATGTTGAATGGTGAGAGAGCATTGCCTAATCCAAGGCAACCAGGGTTTTATCCACATGAAGTGGGTTCTTCAACAAGCAAACATGAACTCTCTTCCACTAATGAAATTTCCATTTCATTGATAGAGGCAAGATAG 2433 0.4143 MASYNVFFLCSLLFSFSAMVISLTTITPNTSIYYNETLISAARIFEAGFHSFGNSQNLYFCIWYMNISPRTIVWVANRDTPVNTSEATFKVSNGGNPVLIDGSGTVIWSSNATETAADPVLLLLDTGNMVVRKGNSSSGNILWQSFDYPGDTLLPGMVLRVNRVTGVYNSLRSWKNSGDPGSGEFLYHLDGHGFPQLVIGKGSSTWLYRIGSWTGLFFSGVPWETLYRYFNFSFVLNDQEVHFGYEPRNASIVSRYMITPLGTVQRFLWSSETKTWQLFLAGPQDQCDNYGLCGENSECNVNNSPQCDCLDGFVLKSAGNLNGGCVRKVDLDCDERDGFVPYKGVKLPDTSSSWFDKSMNLQECEEKCLKNCSCTAYASLDVRNGGSGCIIWFNGLVDMRSESEGQDIFIRVAASELGNSRSKANKKKLAGILVGSGIIILGILIAGYVIYVRRKKHEKPGEDTGINQVNQVQKYEKEDIELPTFDFSTIANATDHFSPSNILGEGGYGPVYKGVLANGREVAVKRLSLKSGQGPQEFKNEVTLIANLQHRNLVKLLGCCIDNDERILIYEYMPNRSLDHFIFDQTGSKVLHWNMRLHIISGIARGLLYLHQDSRLRIIHRDLKTSNILLDSNMNPKISDFGLARVFGGDRVEANTIRVVGTHGYMPPEYAVYGSYSVKSDVFSFGVIVLEMLSGRKNREFFEEQHHHNLLGHAWRLWSEGRPLELMDSFMRDSVIISEVIRCIHIGLLCVQERPDDRPDMSSVVLMLNGERALPNPRQPGFYPHEVGSSTSKHELSSTNEISISLIEAR* 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2239 810 Pfam S-locus glycoprotein domain 208 316 IPR000858 GO:0048544
Amo13g2239 810 Gene3D - 19 146 IPR036426 -
Amo13g2239 810 ProSiteProfiles Protein kinase domain profile. 497 782 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g2239 810 Pfam PAN-like domain 333 399 IPR003609 -
Amo13g2239 810 Gene3D Transferase(Phosphotransferase) domain 1 573 776 - -
Amo13g2239 810 Gene3D Hepatocyte Growth Factor 330 413 - -
Amo13g2239 810 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 16 810 - -
Amo13g2239 810 ProSiteProfiles PAN/Apple domain profile. 333 413 IPR003609 -
Amo13g2239 810 SUPERFAMILY alpha-D-mannose-specific plant lectins 72 180 IPR036426 -
Amo13g2239 810 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 16 810 - -
Amo13g2239 810 CDD PAN_AP_plant 329 413 - -
Amo13g2239 810 Pfam Protein kinase domain 500 700 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g2239 810 ProSitePatterns Serine/Threonine protein kinases active-site signature. 618 630 IPR008271 GO:0004672|GO:0006468
Amo13g2239 810 SMART serkin_6 497 766 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g2239 810 ProSiteProfiles Bulb-type lectin domain profile. 23 144 IPR001480 -
Amo13g2239 810 Pfam D-mannose binding lectin 71 175 IPR001480 -
Amo13g2239 810 PIRSF SRK 1 810 IPR024171 GO:0004674
Amo13g2239 810 Gene3D Phosphorylase Kinase; domain 1 441 572 - -
Amo13g2239 810 MobiDBLite consensus disorder prediction 776 796 - -
Amo13g2239 810 SUPERFAMILY Protein kinase-like (PK-like) 479 789 IPR011009 -
Amo13g2239 810 CDD B_lectin 31 149 IPR001480 -
Amo13g2239 810 SMART ntp_6 334 412 IPR003609 -
Amo13g2239 810 CDD STKc_IRAK 503 770 - -
Amo13g2239 810 SMART blect_4 29 149 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2239 Amo-Chr13 38201943 38206552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2239 443 806 Receptor kinase-like Gene Family AT4G23150 53.243 7.01e-129 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo13g2239 Pkinase 6.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2239 - - ccaj:109805721 1010.75