Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2231 ATGAGAGATGGTGAGAGCTTAGTTTCGGTTGATGGAAGCTTTGAACTGGGTTTCTTCAGTCCTAAATCTAGTACAAGTCGGTATTTGGGTGTGTGGTACAGAGATGCATCAAGAAACCCAACAGTAGTGTGGGTGGCCAATAGAGAAAGACCCCTTCAAAGCACGTCCGGACTCTTGAAATTCAGTGACAAGGGAATTCTTCAACTTCTCAATGACGCAAACACTAGTATTGTTTGGTCATCCAACATATCTTCATCCCTCCAAGCTTCAAATAACTTAATTGCACAGCTCTTGGACTCGGGAAATCTTGTTGTGAAGTACCAACACGCTATGTTGCACAGTTTTGACTATCCTTCTGATACGTTGATGCCAGGAATGAAACTTGGATTAAACTTAGTTACTGGTCTGAATAGATTTCTATCGTGTTGGAAAAGCTCAAATGACCCTGCTATAGGAGAGTATTCTTTAAAAATTAAACCCAAAGGGTATCCGCAACTAGTACAAATGAAGGGATCAGTAATAGTTACTAGAGCAGGACCATGGAATGGTCTTTCTTTTTCAGGATATCCATATGCCAACAACATATATAGCATCGATTTTGTAGTGAATGATGAAGAGATTTATTATCAGGTCACAATGAGTGATAGGTCCCTTTTCTCCATATACAGAACAATCACTTCAGGTACGGGTAATGTTTTGGTTTGGACAAGTCAAACAAGAAATCAGGTTAAAAACACTCCAACTCAGCTGGTAGATCAGTGTGAAATGTATGCCTTTTGTGGTTCAAATTCTATATGCTATATGGATGGTAATGCTCCAACATGTGAATGTTTGAAAGCATATGTTTCCAAATTTCCCAGACAATGGAATATGTCTGATTGGTCTAGTGGTTGCGTCAGAAAGACTTGGTTAGATTGTAATAACACAGATGGGTTCCTGAGGTACAGAGATATGAAGTTGCCAGATACATCTTCTTCAACGTATAATAAGACAATGAATCTTGAGGAATGTCGAGAATCCTGCTTGAAAAACTGTTCTTGTACAGCGTATGCAAATATGGATATTCGTAATGGAGGAAGTGGCTGCCTACTTTGGTTTGATCATCTCATTGACATGAGGATGTTCTCTAAAGGAGGACAAGACCTTTACATTAAAGTCCCTGCTTCAGAATTAGCAGCGGCTAACGGCCATGGGAATATGAAAAATAAGAACGTTGGAATCATAGTAGGTTCGGTTATCTTTGGATTAATCGCATGCGCTGGCACAATGTCGATGATAATTAAAAAGAAAGGTGTAGCAAGAAATATATGCAAGAAAAAGCATAGTTGGAAAGATGTCGATCTACCGATATTTGATTTTTCAGTCATAGCTAAAGCTACAGGAAACTTTGCATCTAATAAAAAGCTTGGAGAAGGTGGTTTTGGTCCCGTATATAAGGGCATACTTCAAGATGGTCGAGAAGTAGCTGTAAAAAGGCTTTCAAAAAGGTCTACTCAAGGGCTGGAAGAATTAAAAAATGAGGTGGTGTTGATAGCTAAACTTCAGCATCGGAATCTTGTCAAGCTTCTTGGTTGTTGTATTCAAGAGTCAGAAAAAATACTAATCTATGAGTTCATGCCTAACAAAAGTTTAGACCAATTTATTTTCGATGAAACTGGACGAAAGCGGCTAGATTGGCTAAAGCGTTTCAACATTATTAGTGGAATTGCTCGAGGACTTTTTTATCTTCATCAAGATTCTATATTGAGGATAATTCATAGAGATCTAAAAACTAGTAATATTTTATTAGATGCAAATTTTAATCCCAAGATATCACATTTTGGTTTAGCTCGAACATTTTTAGATGATCAAGTTGAGGAAAATACAAATAGAATTGCTGGAACATACGGTTATATGCCTCCTGAATATGCATTACGAGGACAATTCTCCATGAAATCAGATATTTTTAGTTATGGTGTAATAATATTAGAGTTGATAAGTGGAAAGAAGAATAGAGAATTTTCAAACTCTGAAAATTACCTTAATCTTCTTGGACATGCATGGAAATTGTGGATTAATGAGAGGCCACTGGAATTATTGGATGAAGTATTAAGGGAATGGTGCAACCCTACTGAAGTCATAAGATGCATACAAGTAGGTTTATTATGTGTGCAACAAAGGCCAGAAGATAGGCCTAACATGTTATCGGTGGTTCTAATGCTAAATGGTGAGAAATGGTTGCCCCAACCAAAATTTCCTGCATTTTATGTAGATTGTGTTGGGACACCGAAAGAAGAATCTTTATCGGCAAACTATGTAAAATTCTCAGCTAATGAAGTTTCCATCACAATCGCAGCAATGGCCAAATTCATCACAACCTTTCTATTTCTATTATTCCTTCCATCTTCTCTGCTTGCAATCGATACCATGACACAATTTCAGTCACTTCCTGATGGCAGTACCTTGGTTTCCGAAGATGAAATCTTTGAGATGGGATTCTTCAGTCCCGGTAATAACTCAAATCGCTACCTTGGAATCTGGTACAAAGGAATCCCAGTTAGAACTGTTGTTTGGGTTGCCAACCGTGAAAATCCGATCAAAGACAGCTCCAGCAAATTGAGCATCAACTCAGAAGGACGACTTGTGATTCTCAGCCATAACGAAACTCTTAAGCAAGTTAATAGTCCAATTGTGCAACTTCTAAACTCAGGAAACTTGGTCCTAAGAGACGAAAAGGATAATGATTTCGAAAGCTACTTATGGCAGAGCTTTGACTATCCATCTGATACGCTGTTACCAGGAATGAAGATTGGTTGGAACCTAAAAAGTGGCCTTAACAGGCAGTTATCAGCATGGAAGAATTGGGATGACCCTTCTCCAGCAGATTTCACTTGGGGAATTCTACTTGGAACCACCCCTGAGTTGGTTATATGGAAAGGAACTACAAAGTACTATAGGAGTGGTCCATGGAACGGAGAAAGATTCACCAGCATAGCGCTTTTCCAATTAGAATTTGTGTCCACCAATGATGAGGTGTTTACCACATACAACCTCAACAATAAGTCAGTGATAACAAGACTCGTTCTAAACAAATCAGTTTATTTACGTCAGCGCTACAATTGGATCCCAGAGAACCAAATTTGGCAATTATATTCGTCGGTGCCTCGTGACAATTGTGATAACTACAATCTTTGTGGTTCTTATGGGAACTGCATTGTGCAAGAGTCACCGCCATGTAAGTGTTTAACAGGTTTTAAGCCGAAATCACCACGAAGCTGGGAGGCATTTGATTGGACAGAAGGATGCATGCAAAGTGAAGAATGGAGGTGTAAAGTGAAAAATAAAGATGGTTTTGAAAAATTAAGTGGGTTAAAAATGCCAGATACCACCAAGTCTTGGGCAAGTAAAAATTTGACACTTGATGGTTGCAGGATTAAGTGTTGGAAGAATTGTTCTTGCACTGCCTATGCAATCTTAGATATTAGAGGAGAAGGCAGCGGCTGTCAAATTTGGTTTGGAGATTTAATGGATCTCAGAGTTGCTTCAATTCCAGGACAAGATTTGTACGTTCGGGTGCCTGTATCAGCTACTGATTCCTCAAACAAAACTATTCCAAGTGAAGAAAGTTCAAAGGATGAGCAAAGGAGAAAGCTTGCTGTGGCAATTTCAGTTAGCTTTTTCTCGGTTCTTATGATTGTTTTAACTTTCTATTGGAGGAAAAAAAAGCTTAGAGTATGTTATGTTGATTTTACTCGTAAAAAAACAGGAAATATACCACAAGAAAAAGGAGATGATGAAGCCCATGAAGAAAAACTTGAGCTTCCATTATTCGATTTTACCACAATAGTTCATGCCACTAATAACTTCTCAAGTGACAAGAGGCTTGGCCAAGGTGGTTTTGGGCACGGTACATTAATTGATGGGCAAGAGGTTGCTGTCAAAAGATTGGCGCATAAGTCTGGACAAGGAGTAAGAGAATTTAAGAATGAAGTTATATTATGTGCCAAACTTCAACACCGCAATCTTGTTAAGGTTCTTGGTTGTTGCATCCAAGGAGAAGAAAGAATATTAATCTATGAGTATATGCCCAATAAAAGTTTAGATTCCTTTCTTTTTGATTCTTCTCGAGAACTTCTTGATTGGATGAAACGATTTAACATCATATTTGGAATTGCTCGTGGACTTCTTTATCTTCACCAAGATTCAAGATTGAGAATTATACATAGAGATCTTAAAACAAGTAATATTTTATTAGACAATGAGTTGAATCCAAAAATTTCAGATTTTGGAGTGGCACGAATGTTTACTGAAAATCAAATGGAAGCAAATACAAAAATAGTTGCAGGAACATATGGCTATATGGCACCAGAATATGCAATAGAAGGGATATTTTCTACCAAATCTGATGTTTTTAGCTTTGGAATAATATTATTAGAGATAGATCATAAATATTTTCCTCCAATGTTACTATTACAGGCATGGAGATTATGGAAAGAAGAAAACCCAATGAAACTAGTAGATGCTTGTTTGGAAGACACTTTTACAATTTCAGAGGTTCTACGTTGCATACACATTGGTCTTTTATGTGTGCAATTGCATCCTGAGGATAGGCCAAACATGGCATCGGTGATTTTGATGCTTACCAATGAGAACACTTTGCCTCAACCAAAAGAACCTGGTTTCCTTATAGAAAGGACGCCAATAATTGAAGAACAAAGTTCATCTAAAAATATGACTAATTCTTCAACTAATGAAGTAACTGTGACATTGTTAGATGCCAGATAA 4764 0.3768 MRDGESLVSVDGSFELGFFSPKSSTSRYLGVWYRDASRNPTVVWVANRERPLQSTSGLLKFSDKGILQLLNDANTSIVWSSNISSSLQASNNLIAQLLDSGNLVVKYQHAMLHSFDYPSDTLMPGMKLGLNLVTGLNRFLSCWKSSNDPAIGEYSLKIKPKGYPQLVQMKGSVIVTRAGPWNGLSFSGYPYANNIYSIDFVVNDEEIYYQVTMSDRSLFSIYRTITSGTGNVLVWTSQTRNQVKNTPTQLVDQCEMYAFCGSNSICYMDGNAPTCECLKAYVSKFPRQWNMSDWSSGCVRKTWLDCNNTDGFLRYRDMKLPDTSSSTYNKTMNLEECRESCLKNCSCTAYANMDIRNGGSGCLLWFDHLIDMRMFSKGGQDLYIKVPASELAAANGHGNMKNKNVGIIVGSVIFGLIACAGTMSMIIKKKGVARNICKKKHSWKDVDLPIFDFSVIAKATGNFASNKKLGEGGFGPVYKGILQDGREVAVKRLSKRSTQGLEELKNEVVLIAKLQHRNLVKLLGCCIQESEKILIYEFMPNKSLDQFIFDETGRKRLDWLKRFNIISGIARGLFYLHQDSILRIIHRDLKTSNILLDANFNPKISHFGLARTFLDDQVEENTNRIAGTYGYMPPEYALRGQFSMKSDIFSYGVIILELISGKKNREFSNSENYLNLLGHAWKLWINERPLELLDEVLREWCNPTEVIRCIQVGLLCVQQRPEDRPNMLSVVLMLNGEKWLPQPKFPAFYVDCVGTPKEESLSANYVKFSANEVSITIAAMAKFITTFLFLLFLPSSLLAIDTMTQFQSLPDGSTLVSEDEIFEMGFFSPGNNSNRYLGIWYKGIPVRTVVWVANRENPIKDSSSKLSINSEGRLVILSHNETLKQVNSPIVQLLNSGNLVLRDEKDNDFESYLWQSFDYPSDTLLPGMKIGWNLKSGLNRQLSAWKNWDDPSPADFTWGILLGTTPELVIWKGTTKYYRSGPWNGERFTSIALFQLEFVSTNDEVFTTYNLNNKSVITRLVLNKSVYLRQRYNWIPENQIWQLYSSVPRDNCDNYNLCGSYGNCIVQESPPCKCLTGFKPKSPRSWEAFDWTEGCMQSEEWRCKVKNKDGFEKLSGLKMPDTTKSWASKNLTLDGCRIKCWKNCSCTAYAILDIRGEGSGCQIWFGDLMDLRVASIPGQDLYVRVPVSATDSSNKTIPSEESSKDEQRRKLAVAISVSFFSVLMIVLTFYWRKKKLRVCYVDFTRKKTGNIPQEKGDDEAHEEKLELPLFDFTTIVHATNNFSSDKRLGQGGFGHGTLIDGQEVAVKRLAHKSGQGVREFKNEVILCAKLQHRNLVKVLGCCIQGEERILIYEYMPNKSLDSFLFDSSRELLDWMKRFNIIFGIARGLLYLHQDSRLRIIHRDLKTSNILLDNELNPKISDFGVARMFTENQMEANTKIVAGTYGYMAPEYAIEGIFSTKSDVFSFGIILLEIDHKYFPPMLLLQAWRLWKEENPMKLVDACLEDTFTISEVLRCIHIGLLCVQLHPEDRPNMASVILMLTNENTLPQPKEPGFLIERTPIIEEQSSSKNMTNSSTNEVTVTLLDAR* 1588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2231 1587 Gene3D - 1 115 IPR036426 -
Amo13g2231 1587 Gene3D - 797 917 IPR036426 -
Amo13g2231 1587 ProSiteProfiles Protein kinase domain profile. 1282 1546 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g2231 1587 ProSiteProfiles Protein kinase domain profile. 463 740 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g2231 1587 Pfam PAN-like domain 1103 1171 IPR003609 -
Amo13g2231 1587 Pfam PAN-like domain 306 372 IPR003609 -
Amo13g2231 1587 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1399 1411 IPR008271 GO:0004672|GO:0006468
Amo13g2231 1587 SMART serkin_6 1282 1516 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g2231 1587 SMART serkin_6 463 740 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g2231 1587 Pfam S-locus glycoprotein domain 177 284 IPR000858 GO:0048544
Amo13g2231 1587 Pfam S-locus glycoprotein domain 978 1082 IPR000858 GO:0048544
Amo13g2231 1587 PANTHER - 1 777 - -
Amo13g2231 1587 SUPERFAMILY alpha-D-mannose-specific plant lectins 42 149 IPR036426 -
Amo13g2231 1587 Pfam Domain of unknown function (DUF3403) 1541 1587 IPR021820 GO:0004674
Amo13g2231 1587 ProSitePatterns Serine/Threonine protein kinases active-site signature. 584 596 IPR008271 GO:0004672|GO:0006468
Amo13g2231 1587 CDD PAN_AP_plant 304 387 - -
Amo13g2231 1587 SUPERFAMILY alpha-D-mannose-specific plant lectins 849 951 IPR036426 -
Amo13g2231 1587 ProSiteProfiles PAN/Apple domain profile. 306 387 IPR003609 -
Amo13g2231 1587 SMART blect_4 806 920 IPR001480 -
Amo13g2231 1587 SMART blect_4 2 118 IPR001480 -
Amo13g2231 1587 CDD PAN_AP_plant 1106 1186 - -
Amo13g2231 1587 Pfam Protein tyrosine and serine/threonine kinase 466 731 IPR001245 GO:0004672|GO:0006468
Amo13g2231 1587 Pfam Protein tyrosine and serine/threonine kinase 1285 1537 IPR001245 GO:0004672|GO:0006468
Amo13g2231 1587 CDD B_lectin 3 118 IPR001480 -
Amo13g2231 1587 ProSiteProfiles Bulb-type lectin domain profile. 1 118 IPR001480 -
Amo13g2231 1587 ProSiteProfiles Bulb-type lectin domain profile. 800 914 IPR001480 -
Amo13g2231 1587 Gene3D Hepatocyte Growth Factor 303 383 - -
Amo13g2231 1587 Gene3D Transferase(Phosphotransferase) domain 1 1355 1550 - -
Amo13g2231 1587 Gene3D Transferase(Phosphotransferase) domain 1 539 740 - -
Amo13g2231 1587 SMART ntp_6 1106 1185 IPR003609 -
Amo13g2231 1587 SMART ntp_6 307 386 IPR003609 -
Amo13g2231 1587 CDD B_lectin 807 920 IPR001480 -
Amo13g2231 1587 Gene3D Phosphorylase Kinase; domain 1 1256 1354 - -
Amo13g2231 1587 Gene3D Phosphorylase Kinase; domain 1 437 538 - -
Amo13g2231 1587 CDD STKc_IRAK 1288 1542 - -
Amo13g2231 1587 CDD STKc_IRAK 469 736 - -
Amo13g2231 1587 PANTHER - 787 1585 - -
Amo13g2231 1587 PANTHER S-LOCUS GLYCOPROTEIN DOMAIN, PAN/APPLE DOMAIN PROTEIN-RELATED 1 777 - -
Amo13g2231 1587 PANTHER S-LOCUS GLYCOPROTEIN DOMAIN, PAN/APPLE DOMAIN PROTEIN-RELATED 787 1585 - -
Amo13g2231 1587 Pfam D-mannose binding lectin 41 144 IPR001480 -
Amo13g2231 1587 Pfam D-mannose binding lectin 848 946 IPR001480 -
Amo13g2231 1587 SUPERFAMILY Protein kinase-like (PK-like) 1267 1560 IPR011009 -
Amo13g2231 1587 ProSiteProfiles PAN/Apple domain profile. 1103 1186 IPR003609 -
Amo13g2231 1587 SUPERFAMILY Protein kinase-like (PK-like) 448 753 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2231 Amo-Chr13 38034910 38063816 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2231 451 771 Receptor kinase-like Gene Family AT4G23140 54.848 3.11e-117 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo13g2231 PK_Tyr_Ser-Thr 3.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2231 - - aip:107614885 1598.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2231 13 38034910 38063816 Amo03g0251 03 4564125 4567339 hybridization