Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2227 ATGGCCAAATTCATCAGAACCTTTCTATTTGTCGTAACCGAACTCCTTATAGTATTCCCTCCATCATCACTTCCAACCGATACCATAACACAATTTGAGTCACTTCGTGATGGCAATACCTTGGTTTCTGAAGATGAAAGCTTTGAGATGGGTTTCTTCAGTCCCAGTAATAACTCAAACCGCTACCTTGGAATTTGGTACAAAGGAATTCCAGTTAAAACTGTTGTTTGGGTTGCCAACCGTGAAAATCCGGTCAAAGACAACTCCAGTAAATTGAGCATCAACTCAGAAGGAAGACTTATGATCCTCAGCCATAACAAAACTCCTGTTTGGTCAGCAAACTCCACAACACAGAGGCAAGTAGTGAGACCAATTTTGCAACTTTTAAACTCAGGGAACTTGGTCCTAAGAGAAGAAAAAGACAAGGATTTCAAAAACTATTTATGGCAGAGCTTTGACTATCCATCCGATACATTTTTACCAGGGATGAAGATTGGTTGGAATCTGAAAAGTGGCCTTAATAGGCAGTTATCAGCATGGAAGAATTGGGATGATCCTTCTCCAGGAGATTTAACTTGGGGACTTGTACTTGGAAGCACTCCTGAGTTGGTTATGTGGAAAAACACTACAGAGTACTATAGGAGTGGTCCATGGAATGGGGAAAGATTTAGCGGCAAAACCACTGCGCTTTTCCAATTAGAATTCGTGTCCACCAGTGATGAGGTGTTTTATACATACAACCTCAGCTCAGTAATAACAAGAGTCATTCTAAACGAATCGGTTTATTCACGTCAGCGCTATAATTGGATCCCAGAGAACCAGACTTGGCGGCTATATTCATCCGTGCCTCGCGACAATTGTGATAACTATAATCTTTGTGGTGCTTATGGTAACTGTCTTGTGAATGAGTCACCACCCTGCGAGTGTCTAACAGGTTTCAAGCCGAAACTATTCAGAAACTGGGACGCATTGGACTGGACTCAAGGATGCGTGCAAAGTGAAGAATGGAGGTGTCAAGCGAAAAACAAAGATGGTTTTCAGAAATTTAGTGGGTTGAAAATGCCAGATACTACCAAGTCTTGGGTGAGTAGGAATTTGACACTTGATGATTGCAGGGTCAAGTGCTGGGAGAATTGTTCTTGCACTGCCTATGCAAATTTAGATATCAGAGGAGAAGGTAGCGGGTGTCAGATTTGGTTTGGAGATTTAATGGATCTCAGGGTTGCTTCAGTTTCGGGCCAAGATTTGTACATTCGGATGCCTGTATCACCAACTGGTTCCTCCAACAAAACTACTGCAAATGAAGAAAGTTTAAAGGGTGGACAAAGAAAAAAACTTCTTGTGGCAATTCCAGTTAGCTTTCTCCTGGTTATTATGATTGTTTTAATTTTCAGTTACTGTTATTGGAGGAAAAGAAAGCTTAAAGAAAAAATAGGAAACATATCACAAGAAGAGGGAGACAAAGTCCATGAAGACAAATTTGAACTTCCATTCTTTGATTTTACAACAATAGTTCGTGCCACTAATAATTTCTCAAGTGATAAGAGGCTTGGCCAAGGTGGTTTTGGGCCCGTGTACATGGGTATATTAATCAATGGGCAAGAGGTTGCAGTCAAAAGGCTGGCGCATAAATCTGGACAAGGAGCAAGAGAATTTAAGAATGAAGTTATATTATGTGCCAAACTTCAACACCGCAATCTTGTTAAGGTTCTTGGTTGTTGCATCCACGGAGAAGAGAGAATATTAATCTATGAATATATGTCCAATAAAAGTTTAGATTCTTTTCTTTTTGATTCTTCTCAAAGGGAGCTCCTTGATTGGCCTAAACGATTTAACATCATATTTGGAATTGCTCGTGGACTTCTATATCTTCACCAAGATTCAAGATTGAGAATTATACATAGAGATCTTAAGACAAGCAACATTTTATTGGACAATGAATTGAATCCAAAGATTTCAGATTTTGGGGTGGCACGAATGTTTACTGGAAATCAAATAGAAGCAAATACAAAAATGGTAGCAGGGACATATGGCTACATGGCACCAGAATATGCAATTGAGGGAATATTTTCTATCAAATCTGATGTTTTTAGCTTCGGAATAATATTATTGGAGGTGGTAAGTGGACGAAAAAATACAGGAGTTTTTTATCCTAATCATGGATTTAATCTTCTTGGACATGCATGGAGATTATGGAAAGAGGAAACTCCAATGAAACTAGTAGATGCTTGTTTAGGAGATGCCTTTACAATGTCAGAAGTTCTACGTTGCATACATATCGGTCTTTTATGTGTACAATTGCATCCTGAGGATAGGCCAAACATGGCATCAGTGATTTTGATGCTCAACAGTGAGAATACATTGCCTCAGCCAAAAGAACCTGGTTTCATTATAGAAAGGATGTCAATAAATGAAGGAAATACTTCATCTGAAAATAAGACTAATTCTTCAACTAATGAAATAACTGTGACATTGTTAGAGGCCAGATAA 2490 0.3896 MAKFIRTFLFVVTELLIVFPPSSLPTDTITQFESLRDGNTLVSEDESFEMGFFSPSNNSNRYLGIWYKGIPVKTVVWVANRENPVKDNSSKLSINSEGRLMILSHNKTPVWSANSTTQRQVVRPILQLLNSGNLVLREEKDKDFKNYLWQSFDYPSDTFLPGMKIGWNLKSGLNRQLSAWKNWDDPSPGDLTWGLVLGSTPELVMWKNTTEYYRSGPWNGERFSGKTTALFQLEFVSTSDEVFYTYNLSSVITRVILNESVYSRQRYNWIPENQTWRLYSSVPRDNCDNYNLCGAYGNCLVNESPPCECLTGFKPKLFRNWDALDWTQGCVQSEEWRCQAKNKDGFQKFSGLKMPDTTKSWVSRNLTLDDCRVKCWENCSCTAYANLDIRGEGSGCQIWFGDLMDLRVASVSGQDLYIRMPVSPTGSSNKTTANEESLKGGQRKKLLVAIPVSFLLVIMIVLIFSYCYWRKRKLKEKIGNISQEEGDKVHEDKFELPFFDFTTIVRATNNFSSDKRLGQGGFGPVYMGILINGQEVAVKRLAHKSGQGAREFKNEVILCAKLQHRNLVKVLGCCIHGEERILIYEYMSNKSLDSFLFDSSQRELLDWPKRFNIIFGIARGLLYLHQDSRLRIIHRDLKTSNILLDNELNPKISDFGVARMFTGNQIEANTKMVAGTYGYMAPEYAIEGIFSIKSDVFSFGIILLEVVSGRKNTGVFYPNHGFNLLGHAWRLWKEETPMKLVDACLGDAFTMSEVLRCIHIGLLCVQLHPEDRPNMASVILMLNSENTLPQPKEPGFIIERMSINEGNTSSENKTNSSTNEITVTLLEAR* 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2227 829 CDD PAN_AP_plant 339 421 - -
Amo13g2227 829 Gene3D Phosphorylase Kinase; domain 1 472 586 - -
Amo13g2227 829 SMART serkin_6 511 782 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g2227 829 CDD B_lectin 33 155 IPR001480 -
Amo13g2227 829 SUPERFAMILY Protein kinase-like (PK-like) 495 792 IPR011009 -
Amo13g2227 829 Pfam Protein tyrosine and serine/threonine kinase 514 779 IPR001245 GO:0004672|GO:0006468
Amo13g2227 829 SMART blect_4 32 155 IPR001480 -
Amo13g2227 829 Gene3D Transferase(Phosphotransferase) domain 1 587 793 - -
Amo13g2227 829 Gene3D Hepatocyte Growth Factor 337 412 - -
Amo13g2227 829 Pfam PAN-like domain 338 406 IPR003609 -
Amo13g2227 829 ProSiteProfiles Protein kinase domain profile. 511 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g2227 829 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 34 822 - -
Amo13g2227 829 PIRSF SRK 1 829 IPR024171 GO:0004674
Amo13g2227 829 SMART ntp_6 341 420 IPR003609 -
Amo13g2227 829 Pfam D-mannose binding lectin 74 181 IPR001480 -
Amo13g2227 829 ProSitePatterns Serine/Threonine protein kinases active-site signature. 632 644 IPR008271 GO:0004672|GO:0006468
Amo13g2227 829 Gene3D - 23 152 IPR036426 -
Amo13g2227 829 ProSiteProfiles PAN/Apple domain profile. 338 421 IPR003609 -
Amo13g2227 829 Pfam Domain of unknown function (DUF3403) 785 829 IPR021820 GO:0004674
Amo13g2227 829 Coils Coil 829 829 - -
Amo13g2227 829 ProSiteProfiles Bulb-type lectin domain profile. 26 149 IPR001480 -
Amo13g2227 829 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 34 822 - -
Amo13g2227 829 SUPERFAMILY alpha-D-mannose-specific plant lectins 75 186 IPR036426 -
Amo13g2227 829 Pfam S-locus glycoprotein domain 213 316 IPR000858 GO:0048544
Amo13g2227 829 CDD STKc_IRAK 517 783 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2227 Amo-Chr13 37986526 37990629 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2227 429 796 Receptor kinase-like Gene Family AT4G23190 51.613 1.87e-129 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo13g2227 PK_Tyr_Ser-Thr 1.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2227 - - qsu:112024700 1027.7