Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2224 ATGGAAGAGCCTGTGGTAGTTAACAAAGGCGAGGAGCCGCTGGATTTGCCACCAGGTTTCAGATTCCACCCAACAGACGAAGAAATCATCACTTATTACCTCACCGAGAAGGTCATGAACAGCAGCTTCAGTGCAACTGCCATAGGTGAAGCCGATTTGAACAAATCCGAACCCTGGGATTTACCAAAGAAAGCAAAGATGGGAGAGAAGGAGTGGTACTTCTTTTGTCAGAAGGACAGGAAATACCCGACGGGGATGAGGACCAATAGAGCAACGGATTCCGGTTACTGGAAGGCAACCGGAAAAGACAAAGAGATTTTCAAAGGGAAAGGGAATCTCGTTGGGATGAAGAAAACGCTTGTTTTCTACCGAGGTAGAGCTCCCAAGGGTGAAAAGACCAATTGGGTCATGCATGAGTTCAGATTGGAAGGCAAATTTGCCAATTATAACCTCCCCAAGGCTGCAAAGGATGAATGGGTTGTGTCGAGGGTTTTTCACAAGAACACAGATGTAAAGAAGACTACTACCCCATCCTCATCATCATCAATAATTCCTGGCCTTTTGAGGATCAACTCAATAGGCGATGATCTTCTAGATTGTTCCACACTCCCACCTCTCATGGACCCTCACCCTACTCCTCTCGATACAACAAAATCCGACGGCTATTATTTCCCCTCCTTCTCATCATCACATCAGATTCTCAATATCAAGCCCGAAGAACACAACACAAGCCACCAAATTCCCATCACCAACTACCAGATTCCAAATTTCAACACCACACTCTCTTCTTCATCATCTCATCAAATCAGACTACAAAATCATCTCAACTTGTTCTCATCATCATCATCAAATAACAATTACCATAATAGCTCGTGGCCAACCTATTATGATGAGGTCCACCACCATCATCAAGATGATATTCTACTAAGAGCAATCGCGTCAAAGAACTATAGCAACGGAGGAGGAGGCGCCGGCGAGTGCAAGGTGGAGCAATTCTCCTCCGGCAACCAGTCAGTGGTGAGCGTTTCGCAAGAGACGGGGCTGAGCAACGACAGAACCACCAATGACACGTCATCGGTGGTTTCGAAGCAGCAGCATAATAATAGAACATTGTACGAGGATCTTGAAGGTCCTTCTTCATCAGTTGCACCTCTTTCAGATTTGGAATGCTTGTGGGATACCTACTGA 1188 0.4571 MEEPVVVNKGEEPLDLPPGFRFHPTDEEIITYYLTEKVMNSSFSATAIGEADLNKSEPWDLPKKAKMGEKEWYFFCQKDRKYPTGMRTNRATDSGYWKATGKDKEIFKGKGNLVGMKKTLVFYRGRAPKGEKTNWVMHEFRLEGKFANYNLPKAAKDEWVVSRVFHKNTDVKKTTTPSSSSSIIPGLLRINSIGDDLLDCSTLPPLMDPHPTPLDTTKSDGYYFPSFSSSHQILNIKPEEHNTSHQIPITNYQIPNFNTTLSSSSSHQIRLQNHLNLFSSSSSNNNYHNSSWPTYYDEVHHHHQDDILLRAIASKNYSNGGGGAGECKVEQFSSGNQSVVSVSQETGLSNDRTTNDTSSVVSKQQHNNRTLYEDLEGPSSSVAPLSDLECLWDTY* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2224 395 Gene3D NAC domain 25 172 IPR036093 GO:0003677|GO:0006355
Amo13g2224 395 ProSiteProfiles NAC domain profile. 16 167 IPR003441 GO:0003677|GO:0006355
Amo13g2224 395 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 380 - -
Amo13g2224 395 Pfam No apical meristem (NAM) protein 17 142 IPR003441 GO:0003677|GO:0006355
Amo13g2224 395 PANTHER NAC DOMAIN-CONTAINING PROTEIN 100-LIKE 3 380 - -
Amo13g2224 395 SUPERFAMILY NAC domain 13 168 IPR036093 GO:0003677|GO:0006355
Amo13g2224 395 MobiDBLite consensus disorder prediction 338 375 - -
Amo13g2224 395 MobiDBLite consensus disorder prediction 338 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2224 Amo-Chr13 37850164 37852287 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2224 2 395 NAC Transcription Factor Family AT3G04060 50.000 1.84e-112 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo13g2224 NAM 1.8e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2224 - - gmx:100784372 497.278