Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2213 ATGAAGATCAATCCTTCTTTCTGGACTATCATTGCTTACACATTAGTTATTGCCACTCCCTTCTTTCATCATGAATCCAATGCAATGAACACTTCCATCATTACCCCAAACCAATGCCTCGGTGACGGCAAGACCATAGTTTCCAAAGATAAAGGAACCTTTGAACTTGGCTTCTTCACAAAATCCAACAAACGCTACCTTGGAATTTGGTACGCCAACATCACAATCCAAACCATTGTGTGGGTGGCGAACGGTGCCGACCCCATCAACGATTATTCCCCTGTTACCCCTCCCATTTTAGAACTTAAAAGCACTGGAAGCTTGGTTCTTACTCACAAGAACGTTCTTGTATGGCAAACAATGAGCAGTTCCCCGGCAACCGCAGTGCGGAATCCGGTGGCGGAGCTTCTTGATTCCGGCAATCTTGTGATAAGAGAGGAGAATGATACAAACCCACAACGCTATTTGTGGCAGAGCTTTGACTACCCTTCAAATACAATGTTGGCAGGGATGAAACTGGGATGGGACATTAGAAGAAATTTCAACAGGAAGATCACAGCCTGGAAGAGTGATGATAATCCAGAACCAGGTGACTTTTCTTGGAGTGTTATGCGGTACAGCTACCCTGAAGTGTATATGACGAAGAGAACAAGAAAGATGTACAGAATTGGACCCTGGAACGGCTTGCGTTTCAGTGGCATGCCAGAACTGAGATCCAATCCAATCTTTAATTTCAACTTCGTCTCCACTGCTGAAGAAGTTTACTACACATGGACCCTCAAGGACCCTTCTCTAACAACCATCGCAGTGCTTAACCAGAGCGCGGGCGGCCGCCCTCGCTACGTTTGGTCGGAGGCCGATAAATCCTGGAGGACTTATTCAACTTTGCCAGGGGACTATTGTGATACCTATGGACTGTGTGGTCCTAATGGATATTGTAGCATAACTTCATCACCAGTGTGTGAGTGTTTGAAAGGGTTTAAGCCCAAGTTTCCCAAAAAGTGGAACTCAATGGATTGGTCCCAAGGATGTGAAAGAAACCATCCAATAAGGTGCAATAGTAATGGTACCAATGAGGATGGTGATGGGTTTGTGCTTTTGCAGAGATTGAAAGTGCCAGATACTGAATATACTTTGGTGTATAAGGATATTGATTTGAATAAATGTAGAGCCATTTGCTTGGAAAATTGTTCATGCATGGCTTATACAAACTCAGATATAAGAGCAGGTGGTCAAGGCTGTGTCATGTGGTTTCATGATTTAATTGATATCAAACTGTTTCCTGATGGTGGACAGGACCTATACGTCCGACTGCGTGCTTCTGACTTGGGTGCTGATGAGCATAGACAAAAGAGAATGAAAATAATAGTTGGAACCACAATTGCCGCAGCAATTATTTCGGTAACTACTTATTCTGCCTACAGATTCAGGAAAAAAATTGCAGAAAAGTCATCGAAGATAGAAGATAATTATGAAAGTTATGTAGATGATTTGGATCTTCCATTGCTTAATTATTCAGCAATTATGGTTGCTAGTAATAACTTCTCAGTGAAGAATAAGATTGGAGAAGGTGGTTTTGGACCAGTATATTTGGGAAAATTAGCAAATGAACAAGAAGTTGCTATAAAGAGACTATCAAAGAGTTCAATACAAGGATTTTCTGAGTTCATAAATGAAGTTAAACTAATTGCAAAACTTCAACATCGAAATCTTGTAAAACTTATTGGTTGTTGCATTCAAGGACAAGAGAAGATGCTAGTTTATGAATACATGACCAACGGTAGCTTAGATTACTTCATTTTCGATCATAGCAAAGGAAAATTGCTAAACTGGCAAAAGCGCAATCACATAATAGGTGGAATTGCTAGAGGCCTTATGTATCTTCATCAAGATTCTCGATTGAGGATTGTACATAGAGATCTCAAAGCAAGTAATATTTTACTTGATGATAATTTAAGTTCAAAAATATCAGATTTTGGAATGGCTAGACCTTTTAGAGGAGAGCAAAACGAAGAAAGTACAAATAAAATTGTTGGAACTTTTGGATACATGGCACCAGAGTATGTCCTTGATGGATTATTTTCGGTAAAATCTGATGTTTACAGTTTTGGCGTTTTATTGCTAGAGATTATAAGTGGGAAAAAGAATAGAAGATCTCATGCAAAGCAATCATCCCTTAACCTCATTGATCATACATGGGCACTGTGGAAAATGGGCAATGCTTTCCAAATAATTGACCCAAATATTGAAGACTCATGCATTGAATCTGAAGTATTGCGTTTCATCCATATTGCTCTATTGTGCGTACAACATTGTCCAGAAGATAGACCTAATATGACCTCAGTAGTTCTAATGTTAAGTAGTGAGATGGAATTGGATCAACCTAAAGAGCCTGGTTTTTTCACTAGGAGGGAAAATGTTGAAGCAAATTCATGCACAAGTTACCCAAGTTCAAATAATGAAATTAGCATAACCTTATTAACTGGCAGGTGA 2493 0.3971 MKINPSFWTIIAYTLVIATPFFHHESNAMNTSIITPNQCLGDGKTIVSKDKGTFELGFFTKSNKRYLGIWYANITIQTIVWVANGADPINDYSPVTPPILELKSTGSLVLTHKNVLVWQTMSSSPATAVRNPVAELLDSGNLVIREENDTNPQRYLWQSFDYPSNTMLAGMKLGWDIRRNFNRKITAWKSDDNPEPGDFSWSVMRYSYPEVYMTKRTRKMYRIGPWNGLRFSGMPELRSNPIFNFNFVSTAEEVYYTWTLKDPSLTTIAVLNQSAGGRPRYVWSEADKSWRTYSTLPGDYCDTYGLCGPNGYCSITSSPVCECLKGFKPKFPKKWNSMDWSQGCERNHPIRCNSNGTNEDGDGFVLLQRLKVPDTEYTLVYKDIDLNKCRAICLENCSCMAYTNSDIRAGGQGCVMWFHDLIDIKLFPDGGQDLYVRLRASDLGADEHRQKRMKIIVGTTIAAAIISVTTYSAYRFRKKIAEKSSKIEDNYESYVDDLDLPLLNYSAIMVASNNFSVKNKIGEGGFGPVYLGKLANEQEVAIKRLSKSSIQGFSEFINEVKLIAKLQHRNLVKLIGCCIQGQEKMLVYEYMTNGSLDYFIFDHSKGKLLNWQKRNHIIGGIARGLMYLHQDSRLRIVHRDLKASNILLDDNLSSKISDFGMARPFRGEQNEESTNKIVGTFGYMAPEYVLDGLFSVKSDVYSFGVLLLEIISGKKNRRSHAKQSSLNLIDHTWALWKMGNAFQIIDPNIEDSCIESEVLRFIHIALLCVQHCPEDRPNMTSVVLMLSSEMELDQPKEPGFFTRRENVEANSCTSYPSSNNEISITLLTGR* 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2213 830 ProSitePatterns Serine/Threonine protein kinases active-site signature. 636 648 IPR008271 GO:0004672|GO:0006468
Amo13g2213 830 Pfam Protein tyrosine and serine/threonine kinase 517 783 IPR001245 GO:0004672|GO:0006468
Amo13g2213 830 CDD PAN_AP_plant 348 438 - -
Amo13g2213 830 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 40 827 - -
Amo13g2213 830 SUPERFAMILY Protein kinase-like (PK-like) 501 799 IPR011009 -
Amo13g2213 830 Pfam PAN-like domain 358 424 IPR003609 -
Amo13g2213 830 SMART serkin_6 515 786 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g2213 830 Pfam S-locus glycoprotein domain 221 331 IPR000858 GO:0048544
Amo13g2213 830 Gene3D - 27 160 IPR036426 -
Amo13g2213 830 ProSiteProfiles PAN/Apple domain profile. 352 439 IPR003609 -
Amo13g2213 830 SMART blect_4 37 163 IPR001480 -
Amo13g2213 830 SUPERFAMILY alpha-D-mannose-specific plant lectins 79 194 IPR036426 -
Amo13g2213 830 Pfam D-mannose binding lectin 78 189 IPR001480 -
Amo13g2213 830 ProSiteProfiles Bulb-type lectin domain profile. 31 157 IPR001480 -
Amo13g2213 830 ProSiteProfiles EGF-like domain profile. 297 333 IPR000742 -
Amo13g2213 830 CDD B_lectin 40 163 IPR001480 -
Amo13g2213 830 ProSiteProfiles Protein kinase domain profile. 515 800 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g2213 830 CDD STKc_IRAK 521 786 - -
Amo13g2213 830 Gene3D Phosphorylase Kinase; domain 1 475 590 - -
Amo13g2213 830 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 40 827 - -
Amo13g2213 830 Pfam Domain of unknown function (DUF3403) 787 830 IPR021820 GO:0004674
Amo13g2213 830 Gene3D Transferase(Phosphotransferase) domain 1 591 801 - -
Amo13g2213 830 SMART ntp_6 359 438 IPR003609 -
Amo13g2213 830 PIRSF SRK 3 830 IPR024171 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2213 Amo-Chr13 37290879 37298627 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2213 456 800 Receptor kinase-like Gene Family AT4G23230 53.868 2.17e-118 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo13g2213 PK_Tyr_Ser-Thr 8.8e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2213 - - ahf:112733195 1614.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g1334 18 24310261 24314882 Amo13g2213 13 37290879 37298627 PCT
Amo13g2213 13 37290879 37298627 Amo18g1334 18 24310261 24314882 PCT