Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2205 ATGGATTCATCACATCTTCTCGGTTTCAGTGTGACTAATTCTAGCTTACTCAGCAAATCATCTTTTCCAACTACACCTCCGTTATCCCACCTGCTACTTGGACCTTTGAATGAAGTAGTAAACTCACCTAATTTGGCTCTTTCTACTCACTTCAACTCTGATACTGATTCTGCATTGAATGATAGTCAGCAGTTAGTTGAAGTTACGCGTGCAGAGAAACGTCACAAATCAATGGAGGAAGCGTCGCTACAAAGCATTCCGTCGAGCACTTTGAAACAATTGCTCATTTTATGCGCCAAAGCAATGTCTGAAAACAACATGAAAGATTTTGATCAATTGATAGACAAGGCTAGAAGTGCTGTGTCTATCAGCGGGGAGCCAATTCAGCGGCTCGGTGCTTATTTAGTGGAAGGGCTTGTTGCAAGGAAGGAGAAATCGGGTAACAACATCTATCATGCTCTTAGGTGCAAGCAGCCTGCAGGTACAGAGTTACTATCATACATGCAGATGTTATATGAAATTTGTCCATACTTCAAGTTTGGTTACATGGCTGCCAATGGAGCTATTGCTGAAGCATGCCGAAATGAGGACCGAATTCACATAATAGATTTTCAGATTGCACAGGGAACTCAATGGACGACTCTCCTTCAAGCTCTTGCAGCAAGGCCTAGTGGGGCTCCACATGTGCGGATCACCGGGATTGATGATCCTGTTTCTAAATATGCTCGAGGAGAAGAATTGGAGGCAGTTGGCGAAAGTTTGTCGAAAATATCTAAGAAATTTGACATTGAGGTTGAGTTTCATGGAATTCCTGTCTTTGCCCCAGATGTAACCAGGGATATGCTTGATGTCCGGCCTGGAGAGGCCTTGGTCGTTAACTTTCCTCTTCAACTCCATCATACGGCCGATGAGAGTGTCGATGTGACTAATCCAAGGGACGGACTTCTGAGATTGGTTAAGTCTCTTTCTCCTAAGGTAACCACATTGGTGGAGCAGGAATCGAACACAAACACGACGCATTTCTTCAACAGGTTCATAGAAACACTTGATTACTACTTGGCCATGTTCGAGTCCATCAATGTTGCTCTCCCAAGAACGAGCAAGGAGCGGATCAACGTGGAACAACATTGTTTAGCTCGAGATATCGTGAACATTGTTTCTTGTGAAGGGAAGGAAAGGGTGGAGCGGCATGAACTGTTTGGTAAGTGGAGGTCTAGGTTCACAATGGCAGGTTTTGTGCAATATCCTTTGAGCTCTTATGTGAATTCCATTATAAGAAACCTCTTGAATCGCTATTCTGAGAATTATAGTCTAGTGGAGAAGGATGGAGCCATGCTGTTGGCATGGAAGAACAGAAATTTGATATCAGCTTCAGCCTGGTATTAA 1386 0.4365 MDSSHLLGFSVTNSSLLSKSSFPTTPPLSHLLLGPLNEVVNSPNLALSTHFNSDTDSALNDSQQLVEVTRAEKRHKSMEEASLQSIPSSTLKQLLILCAKAMSENNMKDFDQLIDKARSAVSISGEPIQRLGAYLVEGLVARKEKSGNNIYHALRCKQPAGTELLSYMQMLYEICPYFKFGYMAANGAIAEACRNEDRIHIIDFQIAQGTQWTTLLQALAARPSGAPHVRITGIDDPVSKYARGEELEAVGESLSKISKKFDIEVEFHGIPVFAPDVTRDMLDVRPGEALVVNFPLQLHHTADESVDVTNPRDGLLRLVKSLSPKVTTLVEQESNTNTTHFFNRFIETLDYYLAMFESINVALPRTSKERINVEQHCLARDIVNIVSCEGKERVERHELFGKWRSRFTMAGFVQYPLSSYVNSIIRNLLNRYSENYSLVEKDGAMLLAWKNRNLISASAWY* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2205 461 Pfam GRAS domain family 91 460 IPR005202 -
Amo13g2205 461 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 57 460 IPR005202 -
Amo13g2205 461 PANTHER CHITIN-INDUCIBLE GIBBERELLIN-RESPONSIVE PROTEIN 1 57 460 - -
Amo13g2205 461 ProSiteProfiles GRAS family profile. 82 461 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2205 Amo-Chr13 36970186 36973516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2205 81 460 GRAS Transcription Factor Family AT5G48150 62.467 7.72e-175 498
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Amo13g2205 GRAS 1.6e-127 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2205 - - adu:107478273 892.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2205 13 36970186 36973516 Amo13g2205 13 36970186 36973516 ECH
Amo13g2205 13 36970186 36973516 Amo03g0318 03 6039239 6042495 hybridization
Amo08g1415 08 23036531 23039996 Amo13g2205 13 36970186 36973516 PCT
Amo13g2205 13 36970186 36973516 Amo08g1415 08 23036531 23039996 PCT