Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2198 ATGGGAAGTCAGAGATATATGGTTGCCGCCGCAGCGACAGTTAGCTTTTGTGTACTTTTGGTTCTTCTTGTTGTAGGAACAGTTAACTTTATAGATAAGAAGGGAACACAAGGTGTTATTAGACAATTGCTTGATCCAGCATCTGAATTGCTAGATGACAACACGGCAAAGGTACTATTAACAAAAAATGTAATTCATTTAAATAAAGAGGCAGAAGATCTCCATCTATGCGTTCGACAAGAATTGCCTGTTAACTTCAATACAATTGGTTCAGATATTCGACCATTAACACAAGCAGACATAAAAAATTTGATTAATCTTTGCCATTATCATTTCAAGGAAAAGTGCGTCTATTGTTTGAGAAAAAATAATCTTCTATTACTGCCATCGAGGGAAGATGATGATGATTCCAAGATTTGGCATGCTGCATATAGGGGACTGCATTTTTCTGGATCTAGTGCTTCCAGACAAAACTCGGGTCGAGTTTTGCTTCAGCAGATATCAGAAGCACCTAGTCCAGGACCTGCTGTTGGATCACCAACACCAAGTCTTGCACCATCCCCTGGACCCAATTTAGCACCCTCATCCGGACCTAGTCCAGCACCATCCCCTGGACCTGGTCTGGCCCCATCTTCTGCTCCGGTACCTGTTGATTCTAGACCTCTGCATCCTCCTTTGTCACCATTTTTTCCTAAACTGACACCACCAACAACATCAAATGCAGATGTTTCTGCTCCTCCATCATCGGACGCTAATAAAACCGAAGATAAGCATAGTAATAAGAAAACAGTTGTTATTGCTGTAGTTATAACTGCACTGGTGACATTGATAGGAGCAGCACTGCTCTTTATGTTCTGTGGTCGGTTTTCGAAGATTGGCCAAGGTAGAAAAAATGATGAGAGGCCACTTCTCAGCTTGAGCATGAGTGACTACTCTGTTGGTCCTTCCAGTTATGGATTTGGAAATTCAATGAAAGGGGAGAAACTTGGGTTCCAATCATCAAGTAATAATTTGGTTGACAACAAGAAGCCCCAGGTTCAAGAAAGTCAATCAATAGGAGCTTTTAGTGCTGCTTTGGGATCACCATTTGAAGTAAAAACTCATTCCCAGTGGACAGGAACCATGCCTTCTGGAATGCCTCCTTTAAAGCCTCCACCTGGCAGGCTGAATCCTCTCCCCCCTGAGCCTCCTTCGTTTAGGCCTTCCGGTAATGCTGCTGCTGCCGCTGCCCCTGCCCCTGCCCCTGCCCTGGCTACTCATGGACCACAACAGGTTGGTGTTGGTGGTGCTCCACGTCCTGGACCTCCACCACCACCACACCCAGCACCAGTTGGTGCCCAACATTCTCCTCCCTTCCCACCACCCCCAGCATTGGCTGCTGCCAGAGCTCATCCTCCACCACCACCTCCTGCACCAGTTGGGGCCAGACCTAGTCCTCCACCACCACTGCCCCCTGCATCAACAGGTGCGAAACCTAGTCCTCCTCCACCGCCCCCAGCTCCAGCTGGTGCCAAACCTGGTCCTCGCCCTCCGCCACCTCCGAAGGGTGGTATACCTCCTCCTCGCCCACCTCCAATCGGGGCTAGCAAACCAAAAGCTACAGAGAACGTTGAAGCTGGCACAAGTGAAGCTGATGCTCCTAAAGCCAAGCTAAAGCCATTTTTCTGGGATAAGGTTCAAGCCAACTCTGATCAATCAATGGTTTGGAATCAAATCAAGTCTGGATCATTCCAGTTTAATGAGGAGATGATAGAAACACTTTTTGGTTATAACGCTGTGGATAAAAACAATGGTCAACGAGGGAAAGAGTCTTCCGCCCAAGACCCTTCACCTCAGTATATCCAGATCATTGACAAGAAGAAAGCACAGAATTTATTAATTCTGTTGCGAGCATTGAACGTGACAATGGAAGAAGTATGTGATGCACTTTATGAAGGAAATGAGCTGCCTGCTGAGTTCCTCCAAACCTTGCTGAAGATGGCACCGACGACTGATGAACAACTTAAGCTTAGACTTTTTACTGGTGAGCTATCTCAACTTGGCCCTGCTGATCAGTTCTTGAAAGCGATGGTTGACATTCCATTTGCTTTCAAGCGAATGGAAGCACTTCTTTTCATGAGTACACTTAAAGAGGAGCTCAATTCTACTATCGAGTCTTTTGCAGTTCTAGAGGTTGCTTGTAAGGAACTAAGAAACAGCCGGCTGTTCCTCAAGCTTCTTGAAGCTGTTCTCAAAACTGGCAACCGTATGAATGATGGAACATTCCGTGGTGGTGCACAAGCATTTAAGCTTGATACACTCCTGAAACTATCTGATGTAAAAGGAACAGATGGCAAGACCACACTCTTACACTTTGTGGTTCAAGAGATTATCCGTTCTGAAGGCATAAAAGCTGCCAGGCTGGCAAATGTGAGTGATCTTAAAGATAGTGAAACTGGAGATCGCTACCGTGACATTGGCCTTCAGGTGGTTTCGCACTTGAGTAGCGAACTTGAGAATGTCAAGAGAGCAGCAATTCTAGATGCTGACACCTTAACTGGAACTACTGCCAAACTTGGCCATGGTCTCATGAAAACCAAAGAGTTGTTAAACAAAGATCTGAAGAATGTGGAGGAAGATAGAGGGTTTAGTGACACAATTAGACGTTTCGTGCAGAATGCTGAGACTGATGTCGTGAGACTTCTGGAAGAAGAGAAGAGAGTCATGGCTCTGGTAAAGAGCACTGGTGATTACTTTCATGGGAAGGCCGGCAAGGACGAAGGCTTACGGTTGTTTGTAATAGTAAGAGACTTCTTAATAATGGTGGACAAGGCATGCAAGCAGGTGAGAGATGCACAGAAGAAGCCTGCGAAATCTCAAAAACAAGAGACATCTCAAGGATCATCTTCCTCAGAGACTCGTCCGCCACCTTCTGATTTTCGTCAGCGGCTCTTTCCAGCAATTGCTGAAAGGAGGATAGGTGACAGTAGTTCGGATGAAGAGAGTCCATAG 2991 0.459 MGSQRYMVAAAATVSFCVLLVLLVVGTVNFIDKKGTQGVIRQLLDPASELLDDNTAKVLLTKNVIHLNKEAEDLHLCVRQELPVNFNTIGSDIRPLTQADIKNLINLCHYHFKEKCVYCLRKNNLLLLPSREDDDDSKIWHAAYRGLHFSGSSASRQNSGRVLLQQISEAPSPGPAVGSPTPSLAPSPGPNLAPSSGPSPAPSPGPGLAPSSAPVPVDSRPLHPPLSPFFPKLTPPTTSNADVSAPPSSDANKTEDKHSNKKTVVIAVVITALVTLIGAALLFMFCGRFSKIGQGRKNDERPLLSLSMSDYSVGPSSYGFGNSMKGEKLGFQSSSNNLVDNKKPQVQESQSIGAFSAALGSPFEVKTHSQWTGTMPSGMPPLKPPPGRLNPLPPEPPSFRPSGNAAAAAAPAPAPALATHGPQQVGVGGAPRPGPPPPPHPAPVGAQHSPPFPPPPALAAARAHPPPPPPAPVGARPSPPPPLPPASTGAKPSPPPPPPAPAGAKPGPRPPPPPKGGIPPPRPPPIGASKPKATENVEAGTSEADAPKAKLKPFFWDKVQANSDQSMVWNQIKSGSFQFNEEMIETLFGYNAVDKNNGQRGKESSAQDPSPQYIQIIDKKKAQNLLILLRALNVTMEEVCDALYEGNELPAEFLQTLLKMAPTTDEQLKLRLFTGELSQLGPADQFLKAMVDIPFAFKRMEALLFMSTLKEELNSTIESFAVLEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGTDGKTTLLHFVVQEIIRSEGIKAARLANVSDLKDSETGDRYRDIGLQVVSHLSSELENVKRAAILDADTLTGTTAKLGHGLMKTKELLNKDLKNVEEDRGFSDTIRRFVQNAETDVVRLLEEEKRVMALVKSTGDYFHGKAGKDEGLRLFVIVRDFLIMVDKACKQVRDAQKKPAKSQKQETSQGSSSSETRPPPSDFRQRLFPAIAERRIGDSSSDEESP* 997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2198 996 MobiDBLite consensus disorder prediction 952 970 - -
Amo13g2198 996 MobiDBLite consensus disorder prediction 175 232 - -
Amo13g2198 996 SUPERFAMILY Formin homology 2 domain (FH2 domain) 611 959 - -
Amo13g2198 996 Gene3D Formin, FH2 domain 546 967 IPR042201 -
Amo13g2198 996 MobiDBLite consensus disorder prediction 368 545 - -
Amo13g2198 996 MobiDBLite consensus disorder prediction 429 528 - -
Amo13g2198 996 SMART it6_source 541 950 IPR015425 -
Amo13g2198 996 PANTHER FORMIN-LIKE PROTEIN 1 994 - -
Amo13g2198 996 MobiDBLite consensus disorder prediction 978 996 - -
Amo13g2198 996 MobiDBLite consensus disorder prediction 943 996 - -
Amo13g2198 996 MobiDBLite consensus disorder prediction 233 250 - -
Amo13g2198 996 MobiDBLite consensus disorder prediction 378 400 - -
Amo13g2198 996 PANTHER FORMIN-RELATED 1 994 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Amo13g2198 996 Pfam Formin Homology 2 Domain 543 935 IPR015425 -
Amo13g2198 996 MobiDBLite consensus disorder prediction 169 259 - -
Amo13g2198 996 ProSiteProfiles Formin homology-2 (FH2) domain profile. 541 961 IPR015425 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2198 Amo-Chr13 36849178 36855806 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2198 244 986 FH2 protein (formin) Gene Family AT5G54650 51.969 0.0 626
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2198 - - ccaj:109810281 753.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2198 13 36849178 36855806 Amo13g2198 13 36849178 36855806 ECH
Amo13g2198 13 36849178 36855806 Amo03g0327 03 6113542 6120009 hybridization
Amo18g1232 18 21686198 21689658 Amo13g2198 13 36849178 36855806 PCT
Amo08g1408 08 22944016 22947367 Amo13g2198 13 36849178 36855806 PCT
Amo13g2198 13 36849178 36855806 Amo18g1232 18 21686198 21689658 PCT
Amo13g2198 13 36849178 36855806 Amo08g1408 08 22944016 22947367 PCT