Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2162 AGCCTCCGCGAAGAGGAAGAACAAGCTGCAATCGCCGACATGGTGAAGTACTCCAGAGAACCCGAAAATCCCACCAAGTCTTGCAAGGCTAGAGGCTCTGATTTGAGGGTTCATTTCAAGAACACTAGGGAGACTGCCTTTGCTATCAGGAAGTTGCCGCTTGTTAAGGCAAAGAGGTATTTGGAGGACGTTTTGGCCCACAAACAGGCCATTCCATTCCGACGCTTCTGTGGTGGTGTTGGGAGGACTGCCCAGGCAAAGAACAGACATTCCAATGGACAAGGACGCTGGCCTGTAAAATCAGCTAAATTCATCCTTGATTTGCTCAAGAATGCTGAGAGCAATGCTGAGGTGAAAGGTTTGGATGTGGATGCTCTRTACATTTCCCACATCCAAGTCAACCAAGCACAGAAACAAAGACGCCGCACCTACCGTGCTCACGGAAGAATCAATCCCTACATGTCATCTCCCTGCCACATAGAGTTGATCTTATCCGAGAAGGAAGAGCCTGTTAAAAAAGAGCCGGAGTCCCAGTTGGCAACAAGCAAGAAGTCTCAAGGCCTTCGTAGTGGTGCTTCATCCTAA 585 0.4889 SLREEEEQAAIADMVKYSREPENPTKSCKARGSDLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPESQLATSKKSQGLRSGASS* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2162 194 MobiDBLite consensus disorder prediction 169 194 - -
Amo13g2162 194 CDD Ribosomal_L22 28 164 IPR001063 GO:0003735|GO:0005840|GO:0006412
Amo13g2162 194 Gene3D Ribosomal protein L22/L17 14 192 IPR036394 GO:0003735|GO:0005840|GO:0006412
Amo13g2162 194 ProSitePatterns Ribosomal protein L22 signature. 140 164 IPR018260 GO:0003735|GO:0005840|GO:0006412
Amo13g2162 194 MobiDBLite consensus disorder prediction 180 194 - -
Amo13g2162 194 Pfam Ribosomal protein L22p/L17e 30 165 IPR001063 GO:0003735|GO:0005840|GO:0006412
Amo13g2162 194 PANTHER 60S RIBOSOMAL PROTEIN L17-2-LIKE 14 194 - -
Amo13g2162 194 Hamap 50S ribosomal protein L22 [rplV]. 13 167 IPR005721 GO:0003735|GO:0006412|GO:0015934
Amo13g2162 194 SUPERFAMILY Ribosomal protein L22 14 167 IPR036394 GO:0003735|GO:0005840|GO:0006412
Amo13g2162 194 PANTHER 60S RIBOSOMAL PROTEIN L17 14 194 IPR005721 GO:0003735|GO:0006412|GO:0015934
Amo13g2162 194 TIGRFAM uL22_arch_euk: ribosomal protein uL22 17 167 IPR005721 GO:0003735|GO:0006412|GO:0015934
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2162 Amo-Chr13 35901533 35903420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2162 14 194 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 86.188 3.10e-115 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2162 K02880 - gmx:100499784 343.969