Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2156 TCGGCACCTCAAAGCCATAAAATTCGACCCTTTCTTTCAACCCTCGTTATCGTACGCAACTCGCAATTGGAAATACGAAAAAGTTCTTTGATCATGCAAATCTTCGTGAAAACCTTGACGGGCAAGACCATCACCCTTGAGGTGGAAAGTTCCGATACAATTGATAATGTCAAGGCCAAAATTCAGGATAAAGAAGGAATCCCTCCTGACCAGCAAAGGCTTATTTTTGCCGGAAAACAACTTGAAGATGGTAGAACCCTTGCCGATTACAACATTCAGAAGGAATCCACACTCCACTTGGTGCTTCGTTTAAGAGGTGGCATGCAAATTTTCGTAAAGACCTTGACTGGGAAAACCATCACCTTAGAGGTCGAATCCTCAGACACCATTGACAATGTCAAAGCCAAAATCCAAGACAAAGAGGGTATCCCACCTGACCAGCAGAGGTTGATTTTTGCTGGGAAGCAGCTTGAGGATGGAAGGACACTAGCAGATTACAACATTCAGAAGGAGTCAACGCTTCACTTGGTTCTCCGTTTGAGAGGTGGCATGCAGATTTTTGTCAAGACTTTGACAGGGAAGACCATAACACTGGAGGTGGAATCCTCAGATACCATTGACAATGTGAAAGCTAAGATTCAGGACAAAGAGGGCATTCCACCAGATCAACAGAGGCTCATCTTCGCCGGTAAGCAGCTTGAAGATGGAAGGACGCTTGCAGATTACAATATTCAGAAGGAGTCCACTTTACATTTGGTGTTGCGGCTCCGTGGTGGCATGCAAATCTTTGTCAAGACACTAACCGGAAAGACAATAACCCTGGAGGTCGAGTCTTCAGACACCATTGACAATGTCAAAGCAAAAATCCAAGACAAAGAGGGTATCCCACCTGACCAGCAGAGACTTATCTTTGCTGGTAAGCAGTTGGAGGATGGAAGGACCCTTGCTGATTACAACATTCAGAAGGAGTCCACCTTGCATCTTGTTTTGCGACTCCGAGGTGGAATGCAAATCTTTGTCAAGACCTTGACCGGAAAGACAATCACTTTGGAGGTTGAAAGTTCTGATACAATTGATAATGTGAAGGCGAAGATTCAGGACAAAGAGGGTATCCCTCCGGATCAGCAGAGGCTCATCTTTGCAGGGAAGCAGCTTGAAGATGGCCGTACTCTTGCTGATTACAACATCCAAAAGGAATCTACTTTGCATTTGGTTCTGAGGCTCCGTGGTGGTATGCAAATTTTTGTGAAGACCCTGACGGGGAAAACCATTACTTTGGAGGTCGAAAGCTCCGATACCATTGATAATGTGAAGGCGAAGATTCAGGACAAGGAGGGTATTCCCCCGGATCAGCAGAGGCTCATCTTTGCTGGCAAACAATTGGAGGATGGTCGTACATTGGCAGACTATAATATCCAAAAGGAATCGACCCTCCATCTTGTCCTTCGCCTTCGTGGTGGCTTTTAA 1467 0.4554 SAPQSHKIRPFLSTLVIVRNSQLEIRKSSLIMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2156 488 CDD Ubl_ubiquitin 260 335 - -
Amo13g2156 488 ProSitePatterns Ubiquitin domain signature. 362 387 IPR019954 -
Amo13g2156 488 Gene3D - 336 411 - -
Amo13g2156 488 Gene3D - 184 259 - -
Amo13g2156 488 Gene3D - 26 108 - -
Amo13g2156 488 Gene3D - 412 488 - -
Amo13g2156 488 Gene3D - 260 335 - -
Amo13g2156 488 Gene3D - 109 183 - -
Amo13g2156 488 Pfam Ubiquitin family 110 181 IPR000626 GO:0005515
Amo13g2156 488 Pfam Ubiquitin family 262 333 IPR000626 GO:0005515
Amo13g2156 488 Pfam Ubiquitin family 414 485 IPR000626 GO:0005515
Amo13g2156 488 Pfam Ubiquitin family 34 105 IPR000626 GO:0005515
Amo13g2156 488 Pfam Ubiquitin family 186 257 IPR000626 GO:0005515
Amo13g2156 488 Pfam Ubiquitin family 338 409 IPR000626 GO:0005515
Amo13g2156 488 ProSitePatterns Ubiquitin domain signature. 134 159 IPR019954 -
Amo13g2156 488 CDD Ubl_ubiquitin 108 183 - -
Amo13g2156 488 ProSiteProfiles Ubiquitin domain profile. 184 259 IPR000626 GO:0005515
Amo13g2156 488 ProSiteProfiles Ubiquitin domain profile. 108 183 IPR000626 GO:0005515
Amo13g2156 488 ProSitePatterns Ubiquitin domain signature. 210 235 IPR019954 -
Amo13g2156 488 ProSiteProfiles Ubiquitin domain profile. 336 411 IPR000626 GO:0005515
Amo13g2156 488 PANTHER UBIQUITIN 389 487 - -
Amo13g2156 488 ProSiteProfiles Ubiquitin domain profile. 260 335 IPR000626 GO:0005515
Amo13g2156 488 SUPERFAMILY Ubiquitin-like 259 335 IPR029071 -
Amo13g2156 488 ProSiteProfiles Ubiquitin domain profile. 412 487 IPR000626 GO:0005515
Amo13g2156 488 SUPERFAMILY Ubiquitin-like 108 183 IPR029071 -
Amo13g2156 488 PANTHER UBIQUITIN 30 238 - -
Amo13g2156 488 PANTHER UBIQUITIN 107 313 - -
Amo13g2156 488 SUPERFAMILY Ubiquitin-like 412 487 IPR029071 -
Amo13g2156 488 CDD Ubl_ubiquitin 184 259 - -
Amo13g2156 488 CDD Ubl_ubiquitin 336 411 - -
Amo13g2156 488 ProSitePatterns Ubiquitin domain signature. 438 463 IPR019954 -
Amo13g2156 488 PANTHER UBIQUITIN 13 30 238 - -
Amo13g2156 488 PANTHER UBIQUITIN 13 183 390 - -
Amo13g2156 488 PANTHER UBIQUITIN 13 107 313 - -
Amo13g2156 488 CDD Ubl_ubiquitin 32 107 - -
Amo13g2156 488 PANTHER UBIQUITIN 13 235 465 - -
Amo13g2156 488 ProSitePatterns Ubiquitin domain signature. 58 83 IPR019954 -
Amo13g2156 488 SUPERFAMILY Ubiquitin-like 28 107 IPR029071 -
Amo13g2156 488 ProSiteProfiles Ubiquitin domain profile. 32 107 IPR000626 GO:0005515
Amo13g2156 488 PANTHER UBIQUITIN 235 465 - -
Amo13g2156 488 PANTHER UBIQUITIN 183 390 - -
Amo13g2156 488 SUPERFAMILY Ubiquitin-like 183 259 IPR029071 -
Amo13g2156 488 PANTHER UBIQUITIN 13 389 487 - -
Amo13g2156 488 PRINTS Ubiquitin signature 42 62 IPR019956 -
Amo13g2156 488 PRINTS Ubiquitin signature 63 83 IPR019956 -
Amo13g2156 488 PRINTS Ubiquitin signature 84 105 IPR019956 -
Amo13g2156 488 CDD Ubl_ubiquitin 412 487 - -
Amo13g2156 488 SMART ubq_7 108 179 IPR000626 GO:0005515
Amo13g2156 488 SMART ubq_7 184 255 IPR000626 GO:0005515
Amo13g2156 488 SMART ubq_7 260 331 IPR000626 GO:0005515
Amo13g2156 488 SMART ubq_7 336 407 IPR000626 GO:0005515
Amo13g2156 488 SMART ubq_7 32 103 IPR000626 GO:0005515
Amo13g2156 488 SMART ubq_7 412 483 IPR000626 GO:0005515
Amo13g2156 488 SUPERFAMILY Ubiquitin-like 334 411 IPR029071 -
Amo13g2156 488 ProSitePatterns Ubiquitin domain signature. 286 311 IPR019954 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2156 Amo-Chr13 35633694 35635907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2156 412 488 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 1.04e-46 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2156 - K08770 psom:113313254 883.248