Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2147 ATGATGTCAAGGTCGTATACAAATCTCTTAGATTTGGCTTCTGGGAATTTCCCGGCAATGGGGAATTCGTTTAAAGAACGGCGGCGGATGCCAAGGGTTATGAGTGTACCTGGGATTGTCACAGAAGTAGATGATGATCAGGCAGTTAGTGTTTCTTCTGATAACCCGTCAACTGTTTCTACAGATAGAATGATCATTGTAGCAAATCAGCTACCTTTAAAAGCAAAGCGACGAGAGGACAACCAAGGTTGGAATTTCAGTTGGAATGAGGATTCCTTGCTTTTACAACTCAAGGATGGACTTCCAGAAGAGATGGAGGTTCTTTATGTTGGATCATTGCGTGTTGACATTGACCCAGCTGAGCAGGATGATGTGTCACAGTATTTGTTGGATAAATTCAAATGTGTTCCTACTTTTCTACCCGCTGATGTTTTGGCAAAGTTTTATGATGGCTTCTGTAAAAGGCAGTTATGGCCACTTTTTCATTACATGTTACCATTTTCAACCGCTAACAGCCACCGTTTTGATCGATCTTTATGGGAAGCCTATGTGCTAGCAAATAAGCTATTTTTTCAAAAGGTAGTTGAAATAATAAACCCAGAAGATGATTTTATTTGGGTTCATGATTATCATTTGATGGTGCTGCCAACCTTTATAAGAAGGCGCTTTAACAGGGTTAAACTGGGATTTTTCCTGCATAGTCCCTTTCCTTCATCAGAGATATATAGGACTCTTCCTGTCAGGGAGGAGATACTTAAAGCATTACTCAACTCTGATATCATTGGATTCCACACGTTTGACTATGCTCGTCATTTCCTTTCTTGCTGTAGTCGTATGCTGGGTCTGGAGTATCAGTCAAAGAGGGGCTATCTAGGATTGGAATATTATGGAAGGACTATCAGTATTAAGATTATGCCTGTAGGGATTCACATGGGTCGAATTGAAACCGTTATGAAGATGGCAGATGAGGAGTGCAAGGCAAGGGAGCTCAAACAGCAATTTGAAGGGAAAACCATTTTGCTTGGTGTTGATGATATGGACATTTTTAAAGGTATTAATTTGAAGATTTTGGCTATGGAGCAAATGCTCAAACAACACCCCAAATGGCAAGGAAGAGCTGTTCTGGTCCAGGTTGTAAATCCTGCAAGGGGAAAAGGGATACATCTAGAAGAGATACATGCTGAAATAGAAGAAAGCTGCAGCAGGATTAACAGGATGTATGGACGGCCTGGTTATGAACCAATTATTTTTATTGATAGATCAGTTTCAGTTGCTGAAAAGGTTGCCTATTACAGCCTTGCTGAGTGTGTTATTGTCACAGCTGTGAGAGATGGGATGAATCTAACTCCTTATGAATATATTGCTTGTAGACAGGGAATATCTGGTAATGGTTCATGTTCCGATATTAGAAGCCCAAAGAAGAGTATGTTAGTAATATCAGAATTTATTGGGTGTTCTCCATCACTCAGTGGGGCTATACGTGTCAATCCATGGAATGTTGAGGCCACTGCAGAGGCAATGAATGAGGCTATCTCAATGAGTGATGGAGAGAAGCAGTTGCGGCATGAAAAGCACTACCGGTATGTTAGCACACATGATGTAGCATATTGGTCACGTAGTTTCTTGCAGGACATGGAGAGGGCTTGCGCTGACCTTCTAAGAAAAAGATGTTGGGGAATTGGTCTTAGTTTTGGATTTAGAGTTGTAGCACTTGACCCAAATTTTCGTAAGCTCTCAATTGATGCTATGGTTTCATCTTACAAGAGGGCAAGGAGTAGGGCCATTTTGTTGGACTATGATGGTACGGTGATGCCACAGAATTCCATTAATAAGAGTCCAAGCAATGAGGTTATCTCTCTTTTGGACACGCTTTGTGCAGACCCCAGAAATGTAGTTTTCATTGTTAGCGGAAGGGGGAGGAATAGCTTAAGTGATTGGTTCTTACCCTGCAAAAATCTGGGAATTGCCGCAGAACATGGTTACTTTTTGAGATGGTCGCAAAGTGCACAATGGGAAATTTGTGGTAAGAACATGGACTTTGGATGGATGCAGATTGCTGAACCCGTGATGAAACTCTACACAGAGGCAACTGATGGTTCCAACATTGAAACAAAGGAAAGTGCTTTGGTCTGGCAATACCGGGACGCAGATCTTGGTTTCGGATCTTCTCAAGCTAAGGAAATGTTGGATCATCTAGAAAGTGTTTTAGCCAATGAGCCCGTTGCCGTGAAGAGTGGCCAGTTCATTGTTGAAGTAAAACCCCAGGATGTGAGCAAAGGCTTAGTTGCCGAAAGGATATTTTCATCAATGGCAGAGAATGGCAAACAGGCTGATTTTGTGTTGTGTGTTGGTGATGATAGATCAGATGAAGACATGTTTGAAATAATCAGTAGTTCAATCTCAAGAAATATTCTTTCAGCCAATTCTTCTGTATTTGCCTGCACAGTTGGACAAAAACCAAGCAAAGCTAAGTATTATCTGGATGATACTACTGAAGTAATAAGCATGCTTGAATCTTTGGCAGAAGAATCAGATTCTTCACCCGACTTAGAAGAAATTGGAGATTCTTTTCAAAGGCAAGTGAGATTATGA 2592 0.4117 MMSRSYTNLLDLASGNFPAMGNSFKERRRMPRVMSVPGIVTEVDDDQAVSVSSDNPSTVSTDRMIIVANQLPLKAKRREDNQGWNFSWNEDSLLLQLKDGLPEEMEVLYVGSLRVDIDPAEQDDVSQYLLDKFKCVPTFLPADVLAKFYDGFCKRQLWPLFHYMLPFSTANSHRFDRSLWEAYVLANKLFFQKVVEIINPEDDFIWVHDYHLMVLPTFIRRRFNRVKLGFFLHSPFPSSEIYRTLPVREEILKALLNSDIIGFHTFDYARHFLSCCSRMLGLEYQSKRGYLGLEYYGRTISIKIMPVGIHMGRIETVMKMADEECKARELKQQFEGKTILLGVDDMDIFKGINLKILAMEQMLKQHPKWQGRAVLVQVVNPARGKGIHLEEIHAEIEESCSRINRMYGRPGYEPIIFIDRSVSVAEKVAYYSLAECVIVTAVRDGMNLTPYEYIACRQGISGNGSCSDIRSPKKSMLVISEFIGCSPSLSGAIRVNPWNVEATAEAMNEAISMSDGEKQLRHEKHYRYVSTHDVAYWSRSFLQDMERACADLLRKRCWGIGLSFGFRVVALDPNFRKLSIDAMVSSYKRARSRAILLDYDGTVMPQNSINKSPSNEVISLLDTLCADPRNVVFIVSGRGRNSLSDWFLPCKNLGIAAEHGYFLRWSQSAQWEICGKNMDFGWMQIAEPVMKLYTEATDGSNIETKESALVWQYRDADLGFGSSQAKEMLDHLESVLANEPVAVKSGQFIVEVKPQDVSKGLVAERIFSSMAENGKQADFVLCVGDDRSDEDMFEIISSSISRNILSANSSVFACTVGQKPSKAKYYLDDTTEVISMLESLAEESDSSPDLEEIGDSFQRQVRL* 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2147 863 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 595 797 IPR006379 -
Amo13g2147 863 MobiDBLite consensus disorder prediction 843 863 - -
Amo13g2147 863 TIGRFAM T6PP: trehalose-phosphatase 590 841 IPR003337 GO:0003824|GO:0005992
Amo13g2147 863 Gene3D Glycogen Phosphorylase B; 317 530 - -
Amo13g2147 863 SUPERFAMILY HAD-like 593 841 IPR036412 -
Amo13g2147 863 Gene3D Glycogen Phosphorylase B; 56 316 - -
Amo13g2147 863 Pfam Glycosyltransferase family 20 63 546 IPR001830 GO:0003824|GO:0005992
Amo13g2147 863 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 63 549 - -
Amo13g2147 863 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING), TREHALOSE-PHOSPHATASE-RELATED 1 853 - -
Amo13g2147 863 CDD HAD_TPP 594 833 - -
Amo13g2147 863 Pfam Trehalose-phosphatase 596 830 IPR003337 GO:0003824|GO:0005992
Amo13g2147 863 Gene3D - 721 852 IPR023214 -
Amo13g2147 863 Gene3D - 592 695 IPR023214 -
Amo13g2147 863 CDD GT20_TPS 63 546 IPR001830 GO:0003824|GO:0005992
Amo13g2147 863 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 853 IPR001830 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2147 Amo-Chr13 35477485 35482411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2147 1 847 Trehalose Biosynthesis Gene Families AT1G06410 77.450 0.0 1379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2147 K16055 - gmx:100800847 1563.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2147 13 35477485 35482411 Amo13g2147 13 35477485 35482411 ECH