Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2098 ATGGCACAATTGCCGCCAAAGATTCCAAACATGGCAAGTAATAATTGGCCTGAGTTTTCATCAAATCAAAATCATCATCACCAAAAGATGCCTTCTCTCACAAGCATTTCAACAAACACAAACCGCGCCCAAAACCAACAACAGCAGCAAAACCCTTCCTGGGTTGACGAGTTTCTGGACTTCTCGTCGGCGAGGCGCGGGGCCCACCGACGATCCATGAGCGACTCCATTTTCGTGGAGTCGCCGAGGCACATTAACAACAGCAGCAGCAACGGCGACGGCGGCGGCGAAGACGAGTTTGAGAGGTTTGATGATTATCAATTCATGAACATGTTCAGTGATGAGGTAGTTTCCGGCGGTGATAACAATACTAACAACTCCATGAATATGATGACGATGATGACGATGCCGCCGCCGCCGCCGGCGACAATGTCGACGTCATCGAATCCTTCTAGTTCTTCCGATCATGATAGCATCAACGATAATGAGAGAGACACAAACAACAAAGAGATCAATAAGGATGATGATCATCATGATCATGATCATGATCAGCAACAAGTGAAGGTAGAATCCGATGAAGATGAAAGCCAATGCAACAATAAAGCTCTGGATAATGATGATGATAGCAGTAAGAATAACAATAATAACTCCAATGCAAATGCTGCTACTACAAATTCCAGTGAAAAAATTACAGACCCCAAGAGGGTAAAAAGGATTTTGGCTAATAGACAATCAGCACAAAGATCAAGAGTGAGGAAGCTGCAATACATATCAGAGCTTGAGCGCAGCGTAACTTCATTACAGGCGGAAGTTTCAGTATTATCACCGCGGGTGGCATTTTTGGATCACCAACGTTTGCTTCTAAATGTTGATAACAGTGCTCTCAAGCAAAGAATCGCAGCTTTGGCACAGGACAAGATCTTCAAAGATGCTCACCAAGAAGCACTGAAAAGGGAGATAGAGAGACTAAGGCAAGTGTATCACCAATTAAACGTGAAGAAGAATATGGAAATTGCTTCAGCCACAGTGTCACCTTCAATATCTCCATCTTCAACCAGACCACGTTGTGATACTCAGAATAATGAAAAGGAACAGCTTATCAATGTTTGA 1110 0.4369 MAQLPPKIPNMASNNWPEFSSNQNHHHQKMPSLTSISTNTNRAQNQQQQQNPSWVDEFLDFSSARRGAHRRSMSDSIFVESPRHINNSSSNGDGGGEDEFERFDDYQFMNMFSDEVVSGGDNNTNNSMNMMTMMTMPPPPPATMSTSSNPSSSSDHDSINDNERDTNNKEINKDDDHHDHDHDQQQVKVESDEDESQCNNKALDNDDDSSKNNNNNSNANAATTNSSEKITDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIERLRQVYHQLNVKKNMEIASATVSPSISPSSTRPRCDTQNNEKEQLINV* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2098 369 MobiDBLite consensus disorder prediction 341 369 - -
Amo13g2098 369 MobiDBLite consensus disorder prediction 157 208 - -
Amo13g2098 369 CDD bZIP_plant_RF2 235 285 IPR044759 GO:0003700|GO:0006355
Amo13g2098 369 Gene3D - 233 305 - -
Amo13g2098 369 SMART brlzneu 230 294 IPR004827 GO:0003700|GO:0006355
Amo13g2098 369 MobiDBLite consensus disorder prediction 81 100 - -
Amo13g2098 369 MobiDBLite consensus disorder prediction 117 235 - -
Amo13g2098 369 PANTHER BZIP FAMILY TRANSCRIPTION FACTOR 1 367 - -
Amo13g2098 369 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 237 252 IPR004827 GO:0003700|GO:0006355
Amo13g2098 369 MobiDBLite consensus disorder prediction 209 229 - -
Amo13g2098 369 SUPERFAMILY Leucine zipper domain 234 288 IPR046347 GO:0003700|GO:0006355
Amo13g2098 369 Pfam bZIP transcription factor 234 277 IPR004827 GO:0003700|GO:0006355
Amo13g2098 369 Coils Coil 313 333 - -
Amo13g2098 369 MobiDBLite consensus disorder prediction 1 53 - -
Amo13g2098 369 PANTHER BASIC LEUCINE ZIPPER 34 1 367 - -
Amo13g2098 369 MobiDBLite consensus disorder prediction 8 53 - -
Amo13g2098 369 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 232 284 IPR004827 GO:0003700|GO:0006355
Amo13g2098 369 MobiDBLite consensus disorder prediction 117 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2098 Amo-Chr13 33394746 33398581 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2098 1 311 bZIP Transcription Factor Family AT3G58120 55.280 2.58e-93 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Amo13g2098 bZIP_1 3.5e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2098 - - ahf:112737744 551.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2098 13 33394746 33398581 Amo13g2098 13 33394746 33398581 ECH