Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2094 ATGCAAAGAAATAACAACGGAATGCATCCAGCATGTGCGGCATGCAAACATCAAAGGAAGAAATGCAGTGAGAATAATTGCATATTAGCCCCTTATTTTCCAGCAAATAGAAGCCGTGAGTTCCATGCAGTGCACAAAGTTTTTGGTGTTAGCAACATAACTAAGTTAGTGAAGAGTGCAAAGGAAGAAGATCGAAGAAGAGTTGTTGACTCATTAATTTGGGAAGCATGTTGTAGGCAAAGAGACCCTATTCATGGTCCTTATGGAGAGTACACAAAAGTTTACAATGAGTATAAGAAAAACAAGAATGAGATTATGGACTCTTCTACTACTATTTATAATGCATATTGTTCAAATTATTTGCATGATTTGGATAATATGATGAGGCAGGAGGTTGTCATCCCATTTCAGCAGCACTCTCAAACATACTATATTACAGGTTTTCTTGTACAAACCAATGAACCTTGA 468 0.3675 MQRNNNGMHPACAACKHQRKKCSENNCILAPYFPANRSREFHAVHKVFGVSNITKLVKSAKEEDRRRVVDSLIWEACCRQRDPIHGPYGEYTKVYNEYKKNKNEIMDSSTTIYNAYCSNYLHDLDNMMRQEVVIPFQQHSQTYYITGFLVQTNEP* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2094 155 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 3 120 - -
Amo13g2094 155 Pfam Lateral organ boundaries (LOB) domain 11 106 IPR004883 -
Amo13g2094 155 ProSiteProfiles LOB domain profile. 10 112 IPR004883 -
Amo13g2094 155 PANTHER LOB DOMAIN-CONTAINING PROTEIN 2 3 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2094 Amo-Chr13 33326228 33327887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2094 9 99 AS2 family AT1G06280 61.538 6.13e-39 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Amo13g2094 LOB 3.2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2094 - - vra:106780610 220.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2094 13 33326228 33327887 Amo13g2094 13 33326228 33327887 ECH