Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2090 ATGGCAGGTCCTATCCTTCTTCGTTCTCTCTGGTCCTCCACAAGAAAATCCGCATCTTCTTTCAACTGTTCCTCTTCTCCTTCCTTTTCTTCTTCTAGATCCTTCCTCTACCGATTCAATCACTTCTCACGCGCCTTCTCTGCCGCCGCACCMGCCTCTTCCGCCYCCACATCTGCATCTARCCCCGGCGGCGCACTTGACCCCAGCCGCCTCCGCAACGTCGCCGTRATTGCGCACGTCGACCATGGCAAGACTACGCTCATGGATCGCCTTCTCCGCCAGTGCGGCGCCGATATCCCCCACGAGCGCGCCATGGATTCCATCACGCTTGAGCGCGAGCGTGGAATCACTATCGCTTCCAAGGTTACGTCCATTTCGTGGAAGGAGAATGAACTGAACATGGTTGATACTCCAGGACATGCTGATTTTGGTGGCGAAGTTGAACGTGTTGTTGGTATGGTTGAAGGGGCTGTTTTGGTTGTTGATGCTGGTGAAGGTCCACTTGCTCAAACAAAATTCGTTCTTGCAAAAGCCTTAAAGTATGGGTTGCGACCTATTCTTCTGCTAAACAAAGTAGACCGCCCTGCAGTTACTGAGGAGATGTGCGATGAAGTTGAGAGCCTGGTGTTTGATCTATTTGCCAACTTGGGTGCTACAGAGGAGCAACTAGACTTTCCAGTTCTTTATGCTTCTGCTAAAGAAGGATGGGCATCTACCACGTTTACCAAGGATCCTCCTGATGAGGCAAAAAATATGTCACAATTGCTTGATGCCATTGTTTCACATGTCCCACCACCAAATGCAAACATTGATGCACCTTTCCAGATGCTGGTTTCAATGATGGAAAAGGACTTCTATCTTGGTCGAATTTTAACCGGACGCGTATATACTGGGGTTGTTCGTGTTGGTGACAGGATTCATGGATTACGTAATAAGGACTCTGTTGCTGAAAAGATTGAAGATGGAAAGGTGGTGAAACTGATGAAAAAGAAGGGTACAAACATGGTTCTAACAGAATGTGCTGGAGCTGGTGATATAATTTCAATAGCTGGCTTGGCAAGTCCATCAATAGGCCACACAGTGGCAACAGCAGAGGTTATGTCTGTATTACCCACAGTTGAATTGGATCCTCCTACAATTTCCATGACTTTTGGTGTAAATGACTCCCCATTGGCCGGTCGAGATGGTACTCATTTGACTGGAGGAAGAATTGGTGACCGACTGATGGCTGAAGCTGAAACCAACCTTGCCATAAATGTGCTTCCTGGCTTATCAGAATCATTTGAGGTTCAGGGAAGAGGAGAGCTACAGCTGGGTATCCTYATTGAGAACATGAGACGCGAGGGATTTGAATTATCTGTGTCTCCACCTAAAGTCATGTATAAAAGTGAAAATGGTCAGAAACTTGAGCCAATAGAAGAAGTCACAATTGAGGTAAATGATGAGCATGTTGGATTGGTAATGGAAGGCTTGTCTCACAGGCGAGGCGAGGTCACAGACATGGGTCCTGTGTCAGGAGCTGTTGGTCGGACTAGACTGACTTTGACTTGTCCATCAAGGGGCTTGGTTGGTTACAGGAGTGTGTTCAGTAGTGACACTCGTGGAACTGGATTCATGCATCGAGCTTTCCTTTCATATGAAAAATTTCGAGGACCTCTTGGCAATGTTAGAAAAGGAGTACTGGTCTCAATGGGTTTTGGTACAATCACAGCTCATGCATTGATGAGCTTAGAAGCACGGGGGATTCTTTTTGTAACTCCTGGAATGGAGGCATATGATGGGATGATTGTGGGAGAACATTCACGAGACACAGATCTTGATATCAATCCGGTGAGAGCTAAAGAGCTTACAAATATTCGTGCTGCTACCAAGGATGAGAATGTGAAGCTGTCTCCCCCACGTCTCATGACACTTGAAGAAGCTATAGGTTATGTGGCTTCAGATGAGCTTATTGAGGTTACCCCAAAGGCCATCCGTTTACGGAAGAAATATCTTGACGTTAACAAGCGTAAGGCCATGAGCAAAAAGCCAAAGGAATGA 2040 0.4662 MAGPILLRSLWSSTRKSASSFNCSSSPSFSSSRSFLYRFNHFSRAFSAAAPASSAXTSASXPGGALDPSRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSITLERERGITIASKVTSISWKENELNMVDTPGHADFGGEVERVVGMVEGAVLVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVTEEMCDEVESLVFDLFANLGATEEQLDFPVLYASAKEGWASTTFTKDPPDEAKNMSQLLDAIVSHVPPPNANIDAPFQMLVSMMEKDFYLGRILTGRVYTGVVRVGDRIHGLRNKDSVAEKIEDGKVVKLMKKKGTNMVLTECAGAGDIISIAGLASPSIGHTVATAEVMSVLPTVELDPPTISMTFGVNDSPLAGRDGTHLTGGRIGDRLMAEAETNLAINVLPGLSESFEVQGRGELQLGILIENMRREGFELSVSPPKVMYKSENGQKLEPIEEVTIEVNDEHVGLVMEGLSHRRGEVTDMGPVSGAVGRTRLTLTCPSRGLVGYRSVFSSDTRGTGFMHRAFLSYEKFRGPLGNVRKGVLVSMGFGTITAHALMSLEARGILFVTPGMEAYDGMIVGEHSRDTDLDINPVRAKELTNIRAATKDENVKLSPPRLMTLEEAIGYVASDELIEVTPKAIRLRKKYLDVNKRKAMSKKPKE* 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2090 679 TIGRFAM small_GTP: small GTP-binding protein domain 72 209 IPR005225 GO:0005525
Amo13g2090 679 Gene3D bipa protein 556 671 IPR042116 -
Amo13g2090 679 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 106 121 IPR031157 -
Amo13g2090 679 Gene3D - 461 555 - -
Amo13g2090 679 CDD BipA_III 378 455 - -
Amo13g2090 679 TIGRFAM TypA_BipA: GTP-binding protein TypA/BipA 71 671 IPR006298 GO:0005525
Amo13g2090 679 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 6 678 - -
Amo13g2090 679 Gene3D Translation factors 268 372 - -
Amo13g2090 679 CDD BipA_TypA_II 274 371 - -
Amo13g2090 679 SUPERFAMILY EF-G C-terminal domain-like 376 459 IPR035647 -
Amo13g2090 679 Gene3D Elongation Factor G (Translational Gtpase), domain 3 379 663 - -
Amo13g2090 679 Pfam Elongation factor Tu GTP binding domain 70 264 IPR000795 GO:0003924|GO:0005525
Amo13g2090 679 SUPERFAMILY EF-G C-terminal domain-like 470 586 IPR035647 -
Amo13g2090 679 Gene3D - 69 267 IPR027417 -
Amo13g2090 679 CDD TypA_BipA 71 266 - -
Amo13g2090 679 Pfam Elongation factor G C-terminus 468 551 IPR000640 -
Amo13g2090 679 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 69 267 IPR000795 GO:0003924|GO:0005525
Amo13g2090 679 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 68 276 IPR027417 -
Amo13g2090 679 Pfam Elongation factor Tu domain 2 288 361 IPR004161 GO:0005525
Amo13g2090 679 SUPERFAMILY Translation proteins 216 371 IPR009000 -
Amo13g2090 679 PANTHER ELONGATION FACTOR FAMILY PROTEIN 6 678 - -
Amo13g2090 679 PRINTS GTP-binding elongation factor signature 149 160 IPR000795 GO:0003924|GO:0005525
Amo13g2090 679 PRINTS GTP-binding elongation factor signature 73 86 IPR000795 GO:0003924|GO:0005525
Amo13g2090 679 PRINTS GTP-binding elongation factor signature 185 194 IPR000795 GO:0003924|GO:0005525
Amo13g2090 679 PRINTS GTP-binding elongation factor signature 113 121 IPR000795 GO:0003924|GO:0005525
Amo13g2090 679 PRINTS GTP-binding elongation factor signature 133 143 IPR000795 GO:0003924|GO:0005525
Amo13g2090 679 CDD BipA_TypA_C 470 550 IPR035651 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2090 Amo-Chr13 33272327 33283240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2090 70 194 Eukaryotic Initiation Factors Gene Family AT3G22980 42.748 2.17e-25 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2090 K06207 - gmx:100782425 1155.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2090 13 33272327 33283240 Amo13g2090 13 33272327 33283240 ECH