Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2073 ATGCTTGGTGTGTCATCACCTCCTGTGGGGAGTACAAGAAGAGATGAAAGAATGGAGAGCTTCAAGTCGATTGGGGTGTCATCAAAAGACGATGGATTTGGCGAACTGTCTGAAGGAAGCTTGTTGGAAAGCATCAATTTTGATGACCTCTTCGTCGGCATCAACATGGAAAGCGATGTGTTGCCAGATTTGGAGATGGAGGTTGATGTCTTTGCCCAATTTTTTGACAACCCTAAGGCAGGGGCATATCAATCTTCAATTCACAATAAACTTGCTTCCAATAAGAATGAGGAGTCTGTAGTTGTGAATCCTCCTGCGAAGAATGCTGGAAAAGGAAGAAAACCATCGTCTCAATCCAAGAGTAATAATCCTCAAGCCAAGATTAGAAAAGTCAAGGTGGATTGGACCCCAGAGTTACATAGGAGATTTGTACAAGCCGTGGAACAACTTGGAGTGGATAAGGCAGTACCTTCTAGGATTTTGGAGATTATGGGAATTGATTGCCTCACTCGCCATAACATTGCAAGTCACCTTCAGAAATATAGATCCCATAGGAAACATTTACTAGCGCGTGAAGCTGAAGCAGCAAATTGGAATCAAAGGAGACAAATGTATGGAGGGAAGAGAGATGTGAGTAGTCCATGGCTAGCACCTACCATGGGTTTCCCTCCAATCACTTCAGTGCACCATTTCAGACCATTACATGTATGGGGACATCCCTCCATGGACCAATCTTTCATACACACGTGGCCTAAAAATCCCACTCATTCACTCTCGCAGTCGCAGCCGTGGGTGCAACCTGTTGCTCTCCCGTTCTGGCATCCTCACCACCAACTAGCTCAAAACATGCTAACCCCAGGATCACCGTGTTTTCCACAGCCTCTGACAACAAGGAAATATGGATCAGGAGGTGTGGCAGGCAGTATTCCAGCAACATCACCACATCCACATGTTATGTACAAAGCAGCAGATCCTCCCATTAACGGCCTCTCCAGCCCCAACCCAAACCCCATCATTGACTTCCATCCGTCAAAGGAGAGCATAGATGCAGCTATTGGAGATGTTCTATCAAAGCCATGGCAGCCACTACCTCTTGGACTTAAAGCTCCAGCACTTGACAGTGTTCTAACTGAATTACAAAGACAAGGAATTTCAAATATTCCACCCTCTTGTGCTTGA 1179 0.4563 MLGVSSPPVGSTRRDERMESFKSIGVSSKDDGFGELSEGSLLESINFDDLFVGINMESDVLPDLEMEVDVFAQFFDNPKAGAYQSSIHNKLASNKNEESVVVNPPAKNAGKGRKPSSQSKSNNPQAKIRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHLLAREAEAANWNQRRQMYGGKRDVSSPWLAPTMGFPPITSVHHFRPLHVWGHPSMDQSFIHTWPKNPTHSLSQSQPWVQPVALPFWHPHHQLAQNMLTPGSPCFPQPLTTRKYGSGGVAGSIPATSPHPHVMYKAADPPINGLSSPNPNPIIDFHPSKESIDAAIGDVLSKPWQPLPLGLKAPALDSVLTELQRQGISNIPPSCA* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2073 392 MobiDBLite consensus disorder prediction 93 128 - -
Amo13g2073 392 SUPERFAMILY Homeodomain-like 128 187 IPR009057 -
Amo13g2073 392 MobiDBLite consensus disorder prediction 112 126 - -
Amo13g2073 392 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 86 392 - -
Amo13g2073 392 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 12 86 - -
Amo13g2073 392 Pfam Myb-like DNA-binding domain 133 182 IPR001005 -
Amo13g2073 392 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 127 186 IPR017930 -
Amo13g2073 392 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 130 184 IPR006447 GO:0003677
Amo13g2073 392 MobiDBLite consensus disorder prediction 1 34 - -
Amo13g2073 392 Gene3D - 127 188 - -
Amo13g2073 392 PANTHER TRANSCRIPTION ACTIVATOR GLK1 86 392 IPR044825 GO:0003700|GO:0045893
Amo13g2073 392 PANTHER TRANSCRIPTION ACTIVATOR GLK1 12 86 IPR044825 GO:0003700|GO:0045893
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2073 Amo-Chr13 32700763 32707274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2073 1 253 G2-like Transcription Factor Family AT5G44190 44.643 2.46e-56 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Amo13g2073 Myb_DNA-binding 4.9e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2073 - - gmx:100775671 446.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2073 13 32700763 32707274 Amo13g2073 13 32700763 32707274 ECH