Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2045 ATGGGTTGTACATGTTCAAAGAGTTCGACCATAGAAGACTGTAGGGAATGGATCACAAACAAATTATCATGTTGCACCAGAACATTAGACCTAAATATTTCACATTTGAATTCCTCGAAGAGGGTTGGGGGTGTTCGGGTTACAGATAAGTCACTGGATGATTATGATGTGAAAGTTTCATCAATTGATAAGGAAGACAATAATTCAATTCAGCCATATGATGATCAAACTGGGAAGAAGATAGAGAAACCTGAATTAATTATTATTGAACATCCTGCTATTGGAAGGATTCCAAAGGCTGGAGAGGCAGAGCAAGTTTCAGCAGGATGGCCGGATTGGCTTTCTTCTGTTGCTGGTGAAGCTATTAAAGGATGGATTCCAAGGAGCGCAAATACTTTTGAAAGGTTACATAAAATTGGGCAAGGAACTTATAGTACTGTTTATAAGGCACGTGATGTAACTAATCAAAAGATTGTTGCACTGAAGAAGGTATATTTTGACAGTTTTAACCATGAGAGCATTAAGTTTATGGCAAGGAAAATCCTTATTCTGCGTAGGCTCAACCATCGAAACATAATAAAGTTGGACAGCTTGATAACATCACAAACATCCCACAGCTTATACCTTGTTTTTGAGTATATGGAATATGATCTTAAAGGACTTGCATCAAATCCAGCCATTAAATTCTCTGAATCACAGGAACATAGGAATGGATTGGATCATTGCCATAGTCATGGTGTCCTCCATCGTGATATAAAAGGATCAAATATTCTCATTGACAATAATAATGTCTTAAAGATTGCAGATTTTGGTTTGACAAGTTTTTTTGACCCCCATCATAGTGTTTCATTGACAAGCCGTGTTGTAACTCTTTGGTATAGACCACCAGAACTTTTACTTGGAGAAAATCATTATGGGGTTGCTGTGGATTTGTGGAGCACTGGTTGTATATTAGAACTATATAGTGGCAAACCTATATTGCCAGGAAAAATAGAGGTTGAGCAGATACATCGGATTTTTAAACTTTGTGGTTCCCCATCTGATGATTATTGGCTAAAATTGTCGTTGCCACTTTCAATGGTATTCAAGTCTCCACACCATTATAGGAGATGTATTCTCATAGAGACTCTACTATCTATTGATCCAACACATCGAGGGACAGTTGCCGCTGCTCTCAGAAGTGAGTTCTTTATATTAGAACCTCTGCCTTGTGATCTATCAAGCTTATCAAAATATCCTCCCAACAAAGAAATCAACGCCAAATTGCAAGATGAAGCAAACAAAAGCAAGTACAATGATATTCATTTACAAAGAACCGAAGTGAAGTCTCCAACTCTCATAGAGAATATGCCTTTGCATATAAGTCCATTGGTTCCTATCAATTCTGGTTGGGTAACAGATGGAAATAACATTAATGATGAGCTTCTTATTTCACATAAAATAGACCATATGAAACTATCTAGACTAATAGCATCTAAGACTCAAATCTAA 1491 0.3696 MGCTCSKSSTIEDCREWITNKLSCCTRTLDLNISHLNSSKRVGGVRVTDKSLDDYDVKVSSIDKEDNNSIQPYDDQTGKKIEKPELIIIEHPAIGRIPKAGEAEQVSAGWPDWLSSVAGEAIKGWIPRSANTFERLHKIGQGTYSTVYKARDVTNQKIVALKKVYFDSFNHESIKFMARKILILRRLNHRNIIKLDSLITSQTSHSLYLVFEYMEYDLKGLASNPAIKFSESQEHRNGLDHCHSHGVLHRDIKGSNILIDNNNVLKIADFGLTSFFDPHHSVSLTSRVVTLWYRPPELLLGENHYGVAVDLWSTGCILELYSGKPILPGKIEVEQIHRIFKLCGSPSDDYWLKLSLPLSMVFKSPHHYRRCILIETLLSIDPTHRGTVAAALRSEFFILEPLPCDLSSLSKYPPNKEINAKLQDEANKSKYNDIHLQRTEVKSPTLIENMPLHISPLVPINSGWVTDGNNINDELLISHKIDHMKLSRLIASKTQI* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2045 496 SMART serkin_6 133 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g2045 496 PANTHER CYCLIN-DEPENDENT KINASE 1 430 - -
Amo13g2045 496 PANTHER CELL DIVISION PROTEIN KINASE 1 430 - -
Amo13g2045 496 ProSiteProfiles Protein kinase domain profile. 133 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g2045 496 SUPERFAMILY Protein kinase-like (PK-like) 126 398 IPR011009 -
Amo13g2045 496 Gene3D Phosphorylase Kinase; domain 1 120 215 - -
Amo13g2045 496 ProSitePatterns Serine/Threonine protein kinases active-site signature. 247 259 IPR008271 GO:0004672|GO:0006468
Amo13g2045 496 Gene3D Transferase(Phosphotransferase) domain 1 217 436 - -
Amo13g2045 496 Pfam Protein kinase domain 133 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g2045 496 ProSitePatterns Protein kinases ATP-binding region signature. 139 162 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2045 Amo-Chr13 31713798 31722146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2045 125 463 Core Cell Cycle Gene Families AT5G10270 40.800 1.07e-84 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Amo13g2045 Pkinase 8.6e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2045 - - adu:107478228 735.332