Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2041 ATGCCGCGTCTTCTTTGCGCTGCCTGTGGTCTTCCGTCAACGAATTCAACGCCACCGTTCCCACTGCCTGATCGCGACGCTTCTCTTCGTCCCTCTCTTGGACTACAAAAGACTCAGGAGAGTAAGCTTAGGAGGAGTGTTGATATTGTTGTTGGCACTCCAGGTCGCGTGAAGGATCATATAGAGAGAGAAAATATTGACCCGAGTCAGCTAAAGTTCCGTGTCCTTGATGAGGCTAATGAAATGCTCAGAATGAGTTTTGTTGAAGATGTGGAACTAATTCTAGGCAAGGTACAAGATGTTAGCAAAGTTCATACATTTCTTTTCAATGCTACTTTGCCAGACTGGGTTAATGGAGGCCGAACAATTATATTTACTGAGAAAAAAGAGTCTGCTTCTGAGCTTGCCGGCTTATTGCCTGGAGCAAGAGCTCTACATGGTGATATACAGCAATCCCAACGTGAGGTTACACTGTCTGATTTTAGGCCGGATGTTCATTTTACTAAGTCGTGGAAGTGA 519 0.4509 MPRLLCAACGLPSTNSTPPFPLPDRDASLRPSLGLQKTQESKLRRSVDIVVGTPGRVKDHIERENIDPSQLKFRVLDEANEMLRMSFVEDVELILGKVQDVSKVHTFLFNATLPDWVNGGRTIIFTEKKESASELAGLLPGARALHGDIQQSQREVTLSDFRPDVHFTKSWK* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2041 172 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 131 IPR014001 -
Amo13g2041 172 Gene3D - 32 128 IPR027417 -
Amo13g2041 172 Pfam DEAD/DEAH box helicase 37 116 IPR011545 GO:0003676|GO:0005524
Amo13g2041 172 PANTHER DEAD (ASP-GLU-ALA-ASP) BOX HELICASE 21 37 118 - -
Amo13g2041 172 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 106 162 IPR027417 -
Amo13g2041 172 PANTHER DEAD (ASP-GLU-ALA-ASP) BOX HELICASE 21 120 162 - -
Amo13g2041 172 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 37 118 - -
Amo13g2041 172 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 120 162 - -
Amo13g2041 172 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 37 117 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2041 Amo-Chr13 31627719 31629626 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2041 43 114 Eukaryotic Initiation Factors Gene Family AT1G72730 41.667 6.28e-09 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2041 K16911 - zju:107414265 186.037