Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2034 ATGGGTTGTATATGTTCAAAGAGTTCGAACATAGAAGACTGTAGAGAATGGATCACAAACAAATTATCATGTTGCACTAGGGCATCAGATCAAAATATTTTACAGTTGAATTCCTCGAAGATGGTTGAGGGTATTCAAGTTAAAGATAAGTCACTTGATAATTATGATGTGAAAGTTTCATCAATTGATAAGAAAGACAATGGTTCAGTTCAGCCATATGATGATCAAACTGGGAAGAAGAAGATAGAGAAACCTGAATTGACTATTATTGACCATCCTGCTATTGGAAGGATTCCAAAGGCTGAAAAGGCAGAGCAAGTTTCAGCAGGATGGCCGGATTGGCTTTCTTCTGTTGCTGGTGAAGCTATCAAGGGATGGATACCAAGGAGCGCAAATACTTTTGAAAGGTTACATAAAATTGGGCAAGGAACTTATAGTACTGTTTATAAGGCACGTGATGTGACTAATCAAAAGATTGTTGCGTTAAAAAAGGTATATTTTGACAGTCTTAACCCTGAGAGCATCAAGTTTATGGCAAGAGAAATCCTTATTCTTCGTAGGCTTAACCATCCAAACATAATAAAGTTGGATAGCTTGATAACATCAGAGACATCCCACAACTTGTACCTTGTTTTTGAGTATATGGAACATGATCTTAAAGGACTTGCATCAAATCCTGCCATTAAATTCTCTGAACCACAGCTAAAATGCTACATGCAACAACTTCTTAGTGGATTGGATCATTGTCATAGTCATGGTGTCATCCATCGTGATATAAAGGGATCAAATATTCTCATTGACAACAATAATGTCTTAAAGATTGCAGATTTTGGTTTGGCAAGTTTTTTTGACCCCCATCATAGTATTCCATTGACAAGACGTGTTGTAACTCTTTGGTATAGACCACCAGAACTTTTACTCGGAGCAAACCATTATGGGGTTGCTGTAGATTTGTGGAGCACTGGTTGCATATTAGGAGAACTATATAGTGGCAGACCTATATTGCCAGGAAAAACAGAGGTTGAGCAGATACATCGAATTTTTAAACTTTGTGGTTCCCCATCTGATGATTATTGGATGAAATTGCGGTTGCCACTTTCAACAGTATTCAAGTCTCCACACCATTATAAGAGATGTATTGCAGACACATTCAAGGATTATCCACATGCTGCTGTGAAGCTTATAGAGACTTTACTATCTATTGATCCAACACACCGAGGGACAGCTGCCGCTGCTCTCAAAAGTGAGTTCTTTACATTAGAACCTCTGCCTTGTGATCCATCAAGCTTACCAAAATATCCTCCCAGCAAAGAAATCGACGCCAAATTGCGAGATGAAGCAAACAGAAGGCAGTGTTATGCTGGAGATAGGGAGAAAAAAATTGACTCAAGAATTAGACAAGTATCAAAGGCATATGTCACGTCAAAAGACAATATTGGTTCAAAAACATCAATACAGCAAGTACAACGATATTCATTTACAAAGAACCGAAGTGAAGTCTCCAACTCTCATAGAGAATATGTGTCCAAACAACTAATTTACCTACCTAAACATTCAGAAGATGCTAAAGAAACTGGAAACAATCTCTCTGGGCATATCCATAGGAGGACTTTGCATATAGGTCCACTGGTTCATGTTAGTTCTGATTGGGCAACAGGTGAAAATAAAATTGATGATGAGCCTCTTATTTCGCACAGAATAGATCATATGAAACTATCTAGGCTAATAGCATCTAAGACTCAAGTCTAA 1749 0.3791 MGCICSKSSNIEDCREWITNKLSCCTRASDQNILQLNSSKMVEGIQVKDKSLDNYDVKVSSIDKKDNGSVQPYDDQTGKKKIEKPELTIIDHPAIGRIPKAEKAEQVSAGWPDWLSSVAGEAIKGWIPRSANTFERLHKIGQGTYSTVYKARDVTNQKIVALKKVYFDSLNPESIKFMAREILILRRLNHPNIIKLDSLITSETSHNLYLVFEYMEHDLKGLASNPAIKFSEPQLKCYMQQLLSGLDHCHSHGVIHRDIKGSNILIDNNNVLKIADFGLASFFDPHHSIPLTRRVVTLWYRPPELLLGANHYGVAVDLWSTGCILGELYSGRPILPGKTEVEQIHRIFKLCGSPSDDYWMKLRLPLSTVFKSPHHYKRCIADTFKDYPHAAVKLIETLLSIDPTHRGTAAAALKSEFFTLEPLPCDPSSLPKYPPSKEIDAKLRDEANRRQCYAGDREKKIDSRIRQVSKAYVTSKDNIGSKTSIQQVQRYSFTKNRSEVSNSHREYVSKQLIYLPKHSEDAKETGNNLSGHIHRRTLHIGPLVHVSSDWATGENKIDDEPLISHRIDHMKLSRLIASKTQV* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2034 582 SUPERFAMILY Protein kinase-like (PK-like) 127 424 IPR011009 -
Amo13g2034 582 ProSitePatterns Protein kinases ATP-binding region signature. 140 163 IPR017441 GO:0005524
Amo13g2034 582 Pfam Protein kinase domain 134 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g2034 582 ProSitePatterns Serine/Threonine protein kinases active-site signature. 254 266 IPR008271 GO:0004672|GO:0006468
Amo13g2034 582 Gene3D Phosphorylase Kinase; domain 1 121 216 - -
Amo13g2034 582 CDD STKc_CDK9_like 134 418 - -
Amo13g2034 582 ProSiteProfiles Protein kinase domain profile. 134 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g2034 582 SMART serkin_6 134 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g2034 582 PANTHER CYCLIN-DEPENDENT KINASE 1 564 - -
Amo13g2034 582 PANTHER CELL DIVISION PROTEIN KINASE 1 564 - -
Amo13g2034 582 Gene3D Transferase(Phosphotransferase) domain 1 217 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2034 Amo-Chr13 31419962 31424818 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2034 126 459 Core Cell Cycle Gene Families AT5G10270 46.857 3.87e-107 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Amo13g2034 Pkinase 9.6e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2034 - - adu:107478228 1141.72