Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Amo13g2031 | ATGACCTCAGATCAGTACTTCAGGGATGCTGCTCGCGAAATCAGTACCTTCGAAGACATACCCTCCTTGGAAAAGTGGAAATCTTCCACCAATGCTGGTGTAGATTTCGATCGAAATGCCACCGAAGGATTCGACTGCAACATCTGCCTAGAATGTGTGCAAGAACCGGTAGTTACCCTTTGTGGCCATCTCTACTGCTGGCCCTGCATTTACAAATGGCTCCATATCCAAACCATCTCTTCCAAAAACATGGAGCAGCAGAAGCCACAATGTCCTGTGTGCAAATCAGAAGTTTCTCAATCCTCCCTAGTTCCACTCTACGGCCGGAACCAAGTCGCAACGCCGTCCGGGAAAAATGCTCGCCAATCAGGCTCTTCAATACCTAGAAGACCCCCTGGCCGGAGACCATACAATCCTGCAGCATCTGTTTTACAGTCTACTTCTCAAACTAATCAACCTCGACCATTCGACTCGATTCAAAGCAGTTACACTTCAACATCTGGAATTTTTGGGAGTAGTAACCCAAGGATCAGAAGGCAATTAATGGAAGCTGATGAATCACTCAGTAGAATATGTTTTTTCCTCTTCTGCTGCTTGGTTATGTGTCTTCTCTTGTTCTGA | 621 | 0.4622 | MTSDQYFRDAAREISTFEDIPSLEKWKSSTNAGVDFDRNATEGFDCNICLECVQEPVVTLCGHLYCWPCIYKWLHIQTISSKNMEQQKPQCPVCKSEVSQSSLVPLYGRNQVATPSGKNARQSGSSIPRRPPGRRPYNPAASVLQSTSQTNQPRPFDSIQSSYTSTSGIFGSSNPRIRRQLMEADESLSRICFFLFCCLVMCLLLF* | 207 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Amo13g2031 | 206 | SUPERFAMILY | RING/U-box | 38 | 101 | - | - | |
Amo13g2031 | 206 | ProSiteProfiles | Zinc finger RING-type profile. | 46 | 95 | IPR001841 | - | |
Amo13g2031 | 206 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RMA1 | 3 | 152 | - | - | |
Amo13g2031 | 206 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RMA1 | 161 | 206 | - | - | |
Amo13g2031 | 206 | SMART | ring_2 | 46 | 94 | IPR001841 | - | |
Amo13g2031 | 206 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 22 | 126 | IPR013083 | - | |
Amo13g2031 | 206 | Pfam | Zinc finger, C3HC4 type (RING finger) | 46 | 94 | IPR018957 | GO:0046872 | |
Amo13g2031 | 206 | ProSitePatterns | Zinc finger RING-type signature. | 61 | 70 | IPR017907 | - | |
Amo13g2031 | 206 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 3 | 152 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 | |
Amo13g2031 | 206 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 161 | 206 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 | |
Amo13g2031 | 206 | MobiDBLite | consensus disorder prediction | 111 | 126 | - | - | |
Amo13g2031 | 206 | CDD | RING-HC_AtRMA_like | 44 | 96 | - | - | |
Amo13g2031 | 206 | MobiDBLite | consensus disorder prediction | 140 | 164 | - | - | |
Amo13g2031 | 206 | MobiDBLite | consensus disorder prediction | 111 | 164 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Amo13g2031 | Amo-Chr13 | 31310970 | 31311668 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Amo13g2031 | 44 | 206 | C3H Transcription Factor Family | AT4G28270 | 40.761 | 5.00e-41 | 136 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Amo13g2031 | K10666 | - | gmx:100785491 | 195.282 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Amo13g2031 | 13 | 31310970 | 31311668 | Amo13g2031 | 13 | 31310970 | 31311668 | ECH |