Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2031 ATGACCTCAGATCAGTACTTCAGGGATGCTGCTCGCGAAATCAGTACCTTCGAAGACATACCCTCCTTGGAAAAGTGGAAATCTTCCACCAATGCTGGTGTAGATTTCGATCGAAATGCCACCGAAGGATTCGACTGCAACATCTGCCTAGAATGTGTGCAAGAACCGGTAGTTACCCTTTGTGGCCATCTCTACTGCTGGCCCTGCATTTACAAATGGCTCCATATCCAAACCATCTCTTCCAAAAACATGGAGCAGCAGAAGCCACAATGTCCTGTGTGCAAATCAGAAGTTTCTCAATCCTCCCTAGTTCCACTCTACGGCCGGAACCAAGTCGCAACGCCGTCCGGGAAAAATGCTCGCCAATCAGGCTCTTCAATACCTAGAAGACCCCCTGGCCGGAGACCATACAATCCTGCAGCATCTGTTTTACAGTCTACTTCTCAAACTAATCAACCTCGACCATTCGACTCGATTCAAAGCAGTTACACTTCAACATCTGGAATTTTTGGGAGTAGTAACCCAAGGATCAGAAGGCAATTAATGGAAGCTGATGAATCACTCAGTAGAATATGTTTTTTCCTCTTCTGCTGCTTGGTTATGTGTCTTCTCTTGTTCTGA 621 0.4622 MTSDQYFRDAAREISTFEDIPSLEKWKSSTNAGVDFDRNATEGFDCNICLECVQEPVVTLCGHLYCWPCIYKWLHIQTISSKNMEQQKPQCPVCKSEVSQSSLVPLYGRNQVATPSGKNARQSGSSIPRRPPGRRPYNPAASVLQSTSQTNQPRPFDSIQSSYTSTSGIFGSSNPRIRRQLMEADESLSRICFFLFCCLVMCLLLF* 207
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2031 206 SUPERFAMILY RING/U-box 38 101 - -
Amo13g2031 206 ProSiteProfiles Zinc finger RING-type profile. 46 95 IPR001841 -
Amo13g2031 206 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA1 3 152 - -
Amo13g2031 206 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA1 161 206 - -
Amo13g2031 206 SMART ring_2 46 94 IPR001841 -
Amo13g2031 206 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 126 IPR013083 -
Amo13g2031 206 Pfam Zinc finger, C3HC4 type (RING finger) 46 94 IPR018957 GO:0046872
Amo13g2031 206 ProSitePatterns Zinc finger RING-type signature. 61 70 IPR017907 -
Amo13g2031 206 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 3 152 IPR045103 GO:0005783|GO:0006511|GO:0061630
Amo13g2031 206 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 161 206 IPR045103 GO:0005783|GO:0006511|GO:0061630
Amo13g2031 206 MobiDBLite consensus disorder prediction 111 126 - -
Amo13g2031 206 CDD RING-HC_AtRMA_like 44 96 - -
Amo13g2031 206 MobiDBLite consensus disorder prediction 140 164 - -
Amo13g2031 206 MobiDBLite consensus disorder prediction 111 164 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Amo13g2031 Amo-Chr13 31310970 31311668 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2031 44 206 C3H Transcription Factor Family AT4G28270 40.761 5.00e-41 136
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2031 K10666 - gmx:100785491 195.282
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2031 13 31310970 31311668 Amo13g2031 13 31310970 31311668 ECH