Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2017 ATGCCGGACTACCGTAGCTTCGCCTCGTCGAATCTGAGCTTCTTATTTTTGTTTAGCATTGTGTTGAAGCTCATGGTGCCGTGTGCGGCGGAGATACAACCTCAGCGCCATGCCACCGACCTACATTGGTATCCGGGGACCGCCACGTGGTACGGTGATCCCGAAGGTGATGGCAGCACCGGTGGAGCATGTGGGTATGGGACCATGGTGGATGTGAAGCCATTGAGGGCGAGGGTGGGGGCAGTGGGTCCCCTATTGTTCATGAATGGTGAAGGGTGCGGCGCGTGTTACAAGGTGAAGTGTGTTGACTCATCTATATGCTCAAGGAGAGCTGTGACGGTTATTATCACCGACGAGTGCCCCGGCTGCCCCTCTGACCAAACACATTTCGACCTCAGTGGTGCCGCCTTTGGCCGCCTCGCTATCGCTGGCGAGAACGGCCAGATCAGGGACCGTGGTCAAATCCCCGTCATTTACCGAAGAACACCATGTAAATACCCTGGAAGAAAAATTGCCTTCCATGTCAATGAAGGTTCCACACCTTTTTGGTTATCACTTCTTGTTGAGTTTGAAGATGCAGAGGGAGATTTAGCCTCCATGCATATAAGAGAGGGAGGGTCAAGTGAGTGGCTGCAGATGAATCATCTATGGGGTGCAAATTGGTGCATTATTGGGGGTCCTTTAAGAGGACCTTTCTCAGTGAAACTAAGCACTTCCTCCGGAAGAACCCTCTCTGCAAGAGATGTTATTCCTACCAATTGGGTTCCAAAGGCCACTTACACTTCTCGCCTAAATTTCTACGCCTAA 807 0.5167 MPDYRSFASSNLSFLFLFSIVLKLMVPCAAEIQPQRHATDLHWYPGTATWYGDPEGDGSTGGACGYGTMVDVKPLRARVGAVGPLLFMNGEGCGACYKVKCVDSSICSRRAVTVIITDECPGCPSDQTHFDLSGAAFGRLAIAGENGQIRDRGQIPVIYRRTPCKYPGRKIAFHVNEGSTPFWLSLLVEFEDAEGDLASMHIREGGSSEWLQMNHLWGANWCIIGGPLRGPFSVKLSTSSGRTLSARDVIPTNWVPKATYTSRLNFYA* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2017 268 Gene3D - 27 164 IPR036908 -
Amo13g2017 268 PANTHER EXPANSIN-B3 10 267 - -
Amo13g2017 268 Pfam Lytic transglycolase 84 157 IPR009009 -
Amo13g2017 268 Pfam Expansin C-terminal domain 171 251 IPR007117 -
Amo13g2017 268 PRINTS Major pollen allergen Lol pI signature 119 134 IPR005795 GO:0005576|GO:0019953
Amo13g2017 268 PRINTS Major pollen allergen Lol pI signature 141 156 IPR005795 GO:0005576|GO:0019953
Amo13g2017 268 PRINTS Major pollen allergen Lol pI signature 173 188 IPR005795 GO:0005576|GO:0019953
Amo13g2017 268 PRINTS Major pollen allergen Lol pI signature 189 204 IPR005795 GO:0005576|GO:0019953
Amo13g2017 268 PRINTS Major pollen allergen Lol pI signature 238 255 IPR005795 GO:0005576|GO:0019953
Amo13g2017 268 SUPERFAMILY PHL pollen allergen 169 262 IPR036749 -
Amo13g2017 268 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 61 169 IPR007112 -
Amo13g2017 268 PANTHER EXPANSIN-LIKE PROTEIN B1 10 267 - -
Amo13g2017 268 SUPERFAMILY Barwin-like endoglucanases 42 168 IPR036908 -
Amo13g2017 268 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 182 262 IPR007117 -
Amo13g2017 268 SMART dpbb_1 79 159 IPR007112 -
Amo13g2017 268 PRINTS Expansin/Lol pI family signature 42 57 IPR007118 GO:0005576
Amo13g2017 268 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576
Amo13g2017 268 PRINTS Expansin/Lol pI family signature 83 101 IPR007118 GO:0005576
Amo13g2017 268 PRINTS Expansin/Lol pI family signature 152 168 IPR007118 GO:0005576
Amo13g2017 268 PRINTS Expansin/Lol pI family signature 210 224 IPR007118 GO:0005576
Amo13g2017 268 PRINTS Expansin/Lol pI family signature 248 262 IPR007118 GO:0005576
Amo13g2017 268 Gene3D - 165 263 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2017 Amo-Chr13 30833165 30837163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2017 14 204 Expansin Gene Family AT4G28250 70.157 2.04e-97 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2017 K20628 - gmx:100804525 481.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2017 13 30833165 30837163 Amo13g2017 13 30833165 30837163 ECH