Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2009 ATGGCTGCTTCTGCTGCAAGGAACAGTGGTAAATCCACAAAGGATGCTGTTGTTGAAGATTCTCATCATCAAAGGGTAATTGCTGAAAGTGGAAGCCAACAAGATTTGGAGATGATGATGATGGATAAGGGAAAAGGCGTTGAGAGGCGGCAATGGAAGCCAGTTTTTGATGAAGCTTCCATGTCAACCAGGCCTCATAAAAAGATTAATCAATCACCACCATCACCATCATCGTCATTTTTAAAACAACAACCACCTCATTTTTCTTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAAGAATAGTGTTCCCTTTTGCATTTGAAGGCTCTCAAACTCAGAATCAAGCAATGCAATTCCCACACCAATTTGGAACCACAAACATGCCTCTCTTCCATCCACCACCACCACAAATTCAGCCATCACAARTACCATTACATCAAAACATGATATCTTTTGGGTCTCAACACCAACAACACCTTCAAAATCTTCAGTATTGGAGTGACACACTGAATCTAAGTCCAAGAGGGAGAGCCATGGCCATGATGAACAACAGAATAGGGCCTGATGGAAGGCCATTGTTTTCGCCTTCACCTCCGGTGCCSTTGAATGCTACAAAGCTCTATAGAGGTGTGAGGCAGCGCCATTGGGGGAAATGGGTAGCAGAGATTCGCCTCCCTCGCAATAGGACTCGCCTATGGCTTGGGACATTCGACACGGCTGAGGACGCCGCCATGGCCTATGACCGCGAGGCCTTCAAGCTTAGAGGGGAGAATGCTAGGCTAAATTTCCCTGAGCTCTTTCTCAACAAGGAWAAAGATCAATCAACAAAAATGGCACAAGATTCTTCTTCTTCTTCTGCTTCGGCATCAAAGGTACCAGAGGCAGAGCAGCCAGAGCCAGAGCCGGAGCCAGAAGAAGACATCACTATGCAGCAGGATTTGAACSCTGKGAGCYTGCCGCCGCCGCCAGCGCCACCATTGCCTCCGGCTTCAATGATTGATGACAATGCTGATAATGATTCAGGAGCTCCGCAGTCTCAGGAGTTGGTTTGGGGGGAAATGGCTGCTTGGTTTAATGCAATTCCTGCAGCTTGGGGTCCTGGTAGTCCTGTGTGGGATGATTTGGACTCAAACAACAATCTTCTGTTTCAATCACAAATTCCATTTATGAATCACAATCAGCAAGAATTCAATGACGATGATGATCCTGAAGCTCATAGAACAATAGAAGGAGATAATAACAGAAAACCAGGTTCTTCTTCCTCTTCTTCTTGCCCTGTTAGACCCTTCTTCTGGAAGGATCAAGATTGA 1314 0.4559 MAASAARNSGKSTKDAVVEDSHHQRVIAESGSQQDLEMMMMDKGKGVERRQWKPVFDEASMSTRPHKKINQSPPSPSSSFLKQQPPHFSSSSSSSSSSSSRIVFPFAFEGSQTQNQAMQFPHQFGTTNMPLFHPPPPQIQPSQXPLHQNMISFGSQHQQHLQNLQYWSDTLNLSPRGRAMAMMNNRIGPDGRPLFSPSPPVPLNATKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAAMAYDREAFKLRGENARLNFPELFLNKXKDQSTKMAQDSSSSSASASKVPEAEQPEPEPEPEEDITMQQDLNXXSLPPPPAPPLPPASMIDDNADNDSGAPQSQELVWGEMAAWFNAIPAAWGPGSPVWDDLDSNNNLLFQSQIPFMNHNQQEFNDDDDPEAHRTIEGDNNRKPGSSSSSSCPVRPFFWKDQD* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2009 437 MobiDBLite consensus disorder prediction 274 293 - -
Amo13g2009 437 PRINTS Ethylene responsive element binding protein signature 209 220 IPR001471 GO:0003700|GO:0006355
Amo13g2009 437 PRINTS Ethylene responsive element binding protein signature 231 247 IPR001471 GO:0003700|GO:0006355
Amo13g2009 437 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 7 434 - -
Amo13g2009 437 MobiDBLite consensus disorder prediction 415 429 - -
Amo13g2009 437 MobiDBLite consensus disorder prediction 396 414 - -
Amo13g2009 437 CDD AP2 207 267 IPR001471 GO:0003700|GO:0006355
Amo13g2009 437 Pfam AP2 domain 209 257 IPR001471 GO:0003700|GO:0006355
Amo13g2009 437 MobiDBLite consensus disorder prediction 387 437 - -
Amo13g2009 437 MobiDBLite consensus disorder prediction 41 64 - -
Amo13g2009 437 MobiDBLite consensus disorder prediction 273 349 - -
Amo13g2009 437 MobiDBLite consensus disorder prediction 114 145 - -
Amo13g2009 437 SMART rav1_2 208 271 IPR001471 GO:0003700|GO:0006355
Amo13g2009 437 Gene3D AP2/ERF domain 208 266 IPR036955 GO:0003700|GO:0006355
Amo13g2009 437 MobiDBLite consensus disorder prediction 1 96 - -
Amo13g2009 437 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF053 7 434 - -
Amo13g2009 437 MobiDBLite consensus disorder prediction 65 96 - -
Amo13g2009 437 SUPERFAMILY DNA-binding domain 208 266 IPR016177 GO:0003677
Amo13g2009 437 ProSiteProfiles AP2/ERF domain profile. 208 265 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2009 Amo-Chr13 30628189 30630677 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2009 136 375 AP2-EREBP Transcription Factor Family AT2G20880 48.077 1.61e-55 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Amo13g2009 AP2 2.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2009 - - adu:107477889 806.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2009 13 30628189 30630677 Amo13g2009 13 30628189 30630677 ECH