Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2001 ATGGAAGACAAGGAGGAGATGGAATCATTGCTTGGTCAAGCTGAAATCTGGAAGTTCATGACCAGCTTCACAGACTCCATGGCGCTAAAATGCGCCGTGGAGCTCGGCATCGCCGACATAATCGAGCGGCACGGCGAGTCGCTGCCGTTGTCGAAGATCGGCGAAGAAATTGAAGACGCGGCTTCGCCTGAGATCTCGATGCTCCAAAGAATAATGAGGGTTCTTGTAAGAAGAAAGATCTTCAGTGCTCAGCACTCGGAAAACGGAGACACGGTGTACGGAGCCACACGCGCCTCCAAGTGGATCCTACGCGACGCAAAGATGACATTGGCGCCGATGTTGCTGCTTGAGAATCATCCCATTCACTTGAACCCTGCTCACTACATTAGTCAGTGTATCAGGGAAGGAATGCAAAATGGAACTGCGTTTTTCAAGTGCCATGGCCATGAACAATTTGTTATGACAGGTTTGGACCCTGAATATAACAGGTTGTTCAATGAGGGTATGGTTTGCACTGCAAGGGTTGTGTCAAAGGCTGTGATATCAGGCTACAAAGATGGGTTCAAAGAGATTAAGTCGTTGGTTGATGTTGGAGGTGGAATTGGAGGGTCACTCTCTGAGATTGTGAAGGCATTCCCACACATCAAAGGTATTAACTTTGATTTGCCTCATGTTGTCGCAACGGCACCCATGTATGATGGTATCACCCATGTTGGTGGAGACATGTTTGCTTCCATTCCTCAAGCAGATGCTATTTACATGAAGTGGATTTTACATGATTGGAGCGACGAGCACTGCATAAAGATTTTGAAGAACTGCAAGAAGGCAATAGGAGAGAGTGGGAAGGTGATAATTGTGGATCATGTTCTTAAGCCGGAAGGAAATGATGTGTTTGATGACACTGGGTTTGCCTTCGACATGATGCTTCTTGCACACAACAGTGGCGGCAAAGAAAGGACCCAAGAAAATTGGAACTGCCTGTTTAAGGAAACAGGCTTCCCTCGCTACAACATCATCAACATTAATGCTCTTCCATCAATCATTGAGGCATTCCCAATCTGA 1062 0.467 MEDKEEMESLLGQAEIWKFMTSFTDSMALKCAVELGIADIIERHGESLPLSKIGEEIEDAASPEISMLQRIMRVLVRRKIFSAQHSENGDTVYGATRASKWILRDAKMTLAPMLLLENHPIHLNPAHYISQCIREGMQNGTAFFKCHGHEQFVMTGLDPEYNRLFNEGMVCTARVVSKAVISGYKDGFKEIKSLVDVGGGIGGSLSEIVKAFPHIKGINFDLPHVVATAPMYDGITHVGGDMFASIPQADAIYMKWILHDWSDEHCIKILKNCKKAIGESGKVIIVDHVLKPEGNDVFDDTGFAFDMMLLAHNSGGKERTQENWNCLFKETGFPRYNIININALPSIIEAFPI* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2001 353 PANTHER O-METHYLTRANSFERASE 4 352 IPR016461 GO:0008168
Amo13g2001 353 PIRSF O-mtase 1 353 IPR016461 GO:0008168
Amo13g2001 353 SUPERFAMILY "Winged helix" DNA-binding domain 11 105 IPR036390 -
Amo13g2001 353 Gene3D Vaccinia Virus protein VP39 104 353 IPR029063 -
Amo13g2001 353 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 17 352 IPR016461 GO:0008168
Amo13g2001 353 Gene3D - 1 102 IPR036388 -
Amo13g2001 353 PANTHER (R,S)-RETICULINE 7-O-METHYLTRANSFERASE-LIKE ISOFORM X1 4 352 - -
Amo13g2001 353 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 108 350 IPR029063 -
Amo13g2001 353 Pfam Dimerisation domain 27 76 IPR012967 GO:0046983
Amo13g2001 353 Pfam O-methyltransferase domain 128 333 IPR001077 GO:0008171
Amo13g2001 353 CDD AdoMet_MTases 194 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2001 Amo-Chr13 30456022 30457904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2001 27 339 Monolignol Biosynthesis Gene Families AT5G54160 39.375 3.37e-76 237
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2001 K22588 - gmx:100800801 594.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2001 13 30456022 30457904 Amo13g2001 13 30456022 30457904 ECH