Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1994 ATGGGGTGTTGTGTCTCAACTAGTAGTAAGAGTACTTGTAGCAGCCGGAGCAATGGAGAGATGGCGAATCCATCATGCTTAGAAATCGGATGCTGTGTGCATAAGAAAGCAAGGAGAACCTTCTCTGATCATGTTATTTCACTACACCATTTGGCGTCGTTGCCGAGCAGGATTTTCACTAATGGAAAGAGTAGAGCTTCTTGCATATTTACGCAGCAGGGCCGCAAAGGGATCAATCAGGATGCAATGATTGTGTGGGAAGATTTTATGTCTGAAGATATGACCTTTTGTGGTGTCTTTGATGGCCATGGTCCACATGGTCATCTCGTTGCGCGCAAAGTGAGGGACGCCTTGCCTTTGAAACTGCTCTCATTTCTGCATTCTTCTGAATCGAAGCGAAACGGATCAGGTAAAGCTTGCTTCAAGGGGAATGTAAAACCGGACAATGGAGACTCTCAGAAGGATTTATCAGCCGAGGATAAACTGAATTCAACGTGGAGAGAGGCTTTCATGAAGGCATATAAGTCTATGGACAAAGAGCTCAGGTCTCATCCGAATTTGGACTGCTTTTGTAGTGGGAGCACGGCTGTCACTATAGTGAAGCAGGGCTCAAATTTGTTCATGGGATATATCGGGGATTCTCGAGCAGTGATGGGATCCAAGGACAGCAATGACTCCATGGTGGCAATTCAGTTGACCATTGATTTGAAGCCCGATTTGCCAAGAGAAGCAGAAAGAATTAAACGGTGCAAGGGAAGGGTGTTTGCTTTGCAAGATGAGCCTGAGGTGCCAAGGGTATGGTTGCCTTTTGATGARGCACCGGGATTAGCYATGGCTAGAGCATTRGGAGATTTCTGCTTGAAGGAGTATGGTGTGATTTCCATACCTGAATTTTCTCACCGGCTGCTTACTGACAAAGATCAGTTTGTTGTTCTTGCCTCAGATGGTGTCTGGGATGTTTTAAGCAATGAAGAGGTGGTTGAGATAGTATCTTCGGCACCAACACGGTCATCAGCCGCAAGGATTCTGGTAGATGCTGCAGCCCGGGAGTGGAAACTTAAGTATCCGACTTCAAAGATGGACGACTGCGCCGTGGTCTGCCTATTTTTGGACGGTAAAATGGACACAGAATCCGACTATGACGAACAAGGCTTCTCTTCTGCAACCCTCCAGAGCAATCATTCTGGAAACCCGGTCGAGTCAGACGACGGACTAAAATCCGAGCCATCTTTGCAGAGGAACTTCACAGTTAGATCCTCAGAGGAAAATGAGCCTAATAACGGAGTACAATCCATTGATGTTGAAGATGGAGCATCATCAGCTGATGATCAAAATTGGTCAGGTTTGGAGGGTGTTACTCGTGTGAACTCATTGGTCCAACTACCTAGATTCTCAGAGGAAAGGCCAAAATCATGA 1416 0.4619 MGCCVSTSSKSTCSSRSNGEMANPSCLEIGCCVHKKARRTFSDHVISLHHLASLPSRIFTNGKSRASCIFTQQGRKGINQDAMIVWEDFMSEDMTFCGVFDGHGPHGHLVARKVRDALPLKLLSFLHSSESKRNGSGKACFKGNVKPDNGDSQKDLSAEDKLNSTWREAFMKAYKSMDKELRSHPNLDCFCSGSTAVTIVKQGSNLFMGYIGDSRAVMGSKDSNDSMVAIQLTIDLKPDLPREAERIKRCKGRVFALQDEPEVPRVWLPFDEAPGLAMARALGDFCLKEYGVISIPEFSHRLLTDKDQFVVLASDGVWDVLSNEEVVEIVSSAPTRSSAARILVDAAAREWKLKYPTSKMDDCAVVCLFLDGKMDTESDYDEQGFSSATLQSNHSGNPVESDDGLKSEPSLQRNFTVRSSEENEPNNGVQSIDVEDGASSADDQNWSGLEGVTRVNSLVQLPRFSEERPKS* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1994 471 MobiDBLite consensus disorder prediction 1 20 - -
Amo13g1994 471 MobiDBLite consensus disorder prediction 408 452 - -
Amo13g1994 471 PANTHER PROTEIN PHOSPHATASE 2C 52-RELATED 1 459 - -
Amo13g1994 471 SMART PP2C_4 55 368 IPR001932 -
Amo13g1994 471 CDD PP2Cc 72 370 IPR001932 -
Amo13g1994 471 MobiDBLite consensus disorder prediction 380 452 - -
Amo13g1994 471 ProSiteProfiles PPM-type phosphatase domain profile. 66 370 IPR001932 -
Amo13g1994 471 MobiDBLite consensus disorder prediction 381 400 - -
Amo13g1994 471 MobiDBLite consensus disorder prediction 130 156 - -
Amo13g1994 471 PANTHER ALPHABET, ISOFORM E-RELATED 1 459 - -
Amo13g1994 471 Gene3D - 59 378 IPR036457 -
Amo13g1994 471 SUPERFAMILY PP2C-like 58 372 IPR036457 -
Amo13g1994 471 Pfam Protein phosphatase 2C 136 347 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1994 Amo-Chr13 30307562 30311296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1994 1 471 PP2C-type Phosphatase Gene Family AT1G03590 67.775 0.0 637
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1994 - - adu:107477895 934.095
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g1994 13 30307562 30311296 Amo13g1994 13 30307562 30311296 ECH
Amo13g1994 13 30307562 30311296 Amo03g0616 03 11431471 11435238 hybridization