Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1971 ATGAAGATGGGTTCCTTCTTCATGAGGGCCTCCAATGCTCTCAAAGGCTACCCTTCATCCTCCAAGCTTCTTCTTCTCTGCACTCTCAGCATCAGTGGTGGAGGTGTAGTGGCATACTCAGAATCACGATCAGAAAGCGAACATCCTATTATTGATGCTCATGTAGCCCCAAAAAAGAAAGTAGTGGTTCTTGGAACAGGATGGGCTGGTACCAGTTTCCTTAAGGATCTGGATGCCTCACGATACGATGTTCAGGTTGTTTCGCCTCGGAACTACTTTGCATTCACTCCCTTGTTACCCAGTGTCACTTGTGGAACAGTTGAAGCTCGAAGCATCGTAGAGCCAGTTCGGACCTTAATAAAAAAGGCAGAGTGTGTCAAGATTGATGCTGCAAACAGAAAGGTCTTTTGTAAAGACAATATCAACAACTTAGTGGGAAGGGGCGAATTTTCGTTGGACTACGACTTCTTGGTTTTAGCAGTAGGATCACAAGTAAATACTTTTAACACCCCTGGAGTGAAAGAGAACTGCCACTTTCTGAAGGATATCGAGGATGCTAAGAGGATCAGGCTGTCTATCACAGATTGCTTTGAGAAGGCTGTTCTTCCTAGTCTATCTGAAGAAGAGCGAAGGTCGAATCTTCATTTTGTAGTTGTTGGTGGGGGTCCAACTGGAGTAGAATTTGCTGCAGAGCTCCATGATTATGTCCAAGAAGATTTGACGAACTTATATCCAGCCGTTAAGGATTCGGTGAAGATAACATTGATTCAATCAGGAGATCACATCCTGAATACGTTTGATAAAAGAATAAGTACATTTGCTGAGCAGAAGTTTTCAAGAGACGGTATAGAGGTTCAAACAGGATGTCGTGTCATCAGTGTTAGCGACAAGGAAATTACAATGAAGGTGAAATCAACAGGAGAGATTTGCTCTGTGCCGCACGGATTGATTGTCTGGTCCACTGGCATTTCAACTATTCCAGTTATAAGGGACTTTATGGAACAAGTTGGTCAGGGTAAAAGACGTGTACTAGCAATCGACGAATGGTTGCGAGTAAAAGGATGTGAAAATGTGTATGCTGTTGGTGATTGTTGTACAATAGATCAACGAAAGATCATGGACGATATCTCGGCCATATTTGCGGCTGCAGACAAAAATAACTCCGGTACCTTAACCATTGAAGAATTCCAAGATGTGATGGATGACATCTTATTAAGATATCCACAAGTTGAACTTTTTATGAAGAAAAAGCATCTTCTTGATTTCACCTCTCTGTGGTTAGATTCACAAGGGAATGAAAGAAAAGAGATAGACATAGAAGGGTTTAAGCAGGCTCTTTCTCATGCGGATTCACAGATGAAGAGTCTTCCAGCTACTGCACAGCTAGATGCTTTAATCGCATGGATCAATGTGAAGAGAATCCTGAAGGTCCTCGGCGATTTAGAGGAACCGGACGTCATAAGTTCCTTCCCTTCCGGTATAAGCATTTTGGGCAATTCGCACCGTTGGGTGGCGAGCAAGCGGCCGCAGAACTTCCCGGGGACTGGGTTTCCATGGGTCACAGCACTCAATGGCTCTGGTATTCTGTATATGCAAGAATGCGTTGGTCATCCTTCTATCACACAGCATCAAGGGTTTTTAATGAGTATCCCAGTTGGTCCAAGTCTGCTATTTAGTGGAGGCCTAGTGGCATACGGTGAAGCGGTACAAAGTGAGAATGTGAAAGAAGCCCCAAGAAAGAAAGTGGTGATTCTTGGAACTGGTTGGGCAGGAACCAGTTTTCTTAAGAGCATCAGAAGTTCATCTTATGATATCCATGTTGTTTCACCTCGTAACTATTTTGCATTCACCCCTTTGTTGCCAAGTGTCACTTGTGGCACTGTCGAAGCACGCAGCATTGTTGAACCCATTCGCAACATCTCAAGAAAGAGTGGTGTAAATATTGAATTCAGTGAAGCTGAATGCTATAAGATCGACCCGAAGAACAAGAAAGTTTACTGCCGTGCTGATCCAGAGAAAAAGATGGGTGGGATTGAAGATTTTTCCCTTGATTATGATTACCTTGTAATAGCCATGGGAGCACGTTCTAATACCTTCAACACACCTGGAGTTCAGGAACATGCTTACTTCTTGAAGGAAGTGGATGATGCTCTAAGAATCCGGCAAAAGGTGGTTGATCTTTTTGAGAAAGCAAGCATTCCATCCATATCTGATGAAGAGAAGAAGAAGCTTCTGAGTTTTGTGATTGTTGGAGGAGGCCCAACTGGGGTAGAGTTTGCTGCAGAACTTCATGACTTTGTTCATGAGGATCTTTCTAAACTCTATCCTTCTCTACAACGTTATGTCAATATCACTTTGCTGGAGGCCGGAGATCATATCTTAAACATGTTTGACAAGAGAATCACAGAATTTGCTGAAACAAAGTTCAAAAGGGATGGCATAGATGTGAAGTTAGGATCTATGGTTATCAAAGTAAGTGAGAGAGAAATCTCGGCCAAAGACAGAGTAAGCGGTCAAGTTGCTTCCATACCTCATGGAATGGTAGTTTGGTCCACCGGCGTCGGTCCTCGCCCAGAAATAATTGAATTTATGAAACAAGTTGGCCAGAGTAATAGACGTGCATTAGCCACTGATGAATGGCTAAGGGTGGAGGGATATGACAACATCTATGCTTTAGGTGATTGTGCCACTATAAATCAGAGGAAAGTTATGGAAGATATAGCATTGATATTCAGCAAGGCAGACAAGAAGAACAGCGGGAAGTTGGATCTGAAAGAGTTTCAAGGCGTAGTGGACGACATAATCGAGAGGTACCCTCAGGTGGAGATTTATTTAAAGAAGAACCAAATGAAAGATATTGCCACCTTGCTCAAGTTTTCTCAAGACAGCTCAGTTACTGTTGACATTGAATCCTTCAAATCTGCACTTTCCAATGTTGATACTCAGATGAAAAATCTCCCTCCAACAGCTCAGGTAGCTGCTCAGCAAGGAGCGTATCTTGCAGATTGTTTCAACCGTATGGAGATATGCGAGCGGTATCCGGAAGGTCCTCTTAGATTCAGGGGAACCGGACGCCATCGCTTTCATCCCTTCAGGTACAAGCATTTTGGACAATTTGCTCCTCTAGGAGGAGAACAAACTGCAGCTCAACTTCCGGGAGATTGGATTTCAATTGGCCATAGCACTCAATGGTTGTGGTATTCTATATATGCTAGCAAACTAGTGAGTTGGAGAACAAGAGCATTGGTGGTATCTGATTGGGGAAGGAGATTCGTATTTGGGAGGGACTCAAGTCGAATCTGA 3303 0.4332 MKMGSFFMRASNALKGYPSSSKLLLLCTLSISGGGVVAYSESRSESEHPIIDAHVAPKKKVVVLGTGWAGTSFLKDLDASRYDVQVVSPRNYFAFTPLLPSVTCGTVEARSIVEPVRTLIKKAECVKIDAANRKVFCKDNINNLVGRGEFSLDYDFLVLAVGSQVNTFNTPGVKENCHFLKDIEDAKRIRLSITDCFEKAVLPSLSEEERRSNLHFVVVGGGPTGVEFAAELHDYVQEDLTNLYPAVKDSVKITLIQSGDHILNTFDKRISTFAEQKFSRDGIEVQTGCRVISVSDKEITMKVKSTGEICSVPHGLIVWSTGISTIPVIRDFMEQVGQGKRRVLAIDEWLRVKGCENVYAVGDCCTIDQRKIMDDISAIFAAADKNNSGTLTIEEFQDVMDDILLRYPQVELFMKKKHLLDFTSLWLDSQGNERKEIDIEGFKQALSHADSQMKSLPATAQLDALIAWINVKRILKVLGDLEEPDVISSFPSGISILGNSHRWVASKRPQNFPGTGFPWVTALNGSGILYMQECVGHPSITQHQGFLMSIPVGPSLLFSGGLVAYGEAVQSENVKEAPRKKVVILGTGWAGTSFLKSIRSSSYDIHVVSPRNYFAFTPLLPSVTCGTVEARSIVEPIRNISRKSGVNIEFSEAECYKIDPKNKKVYCRADPEKKMGGIEDFSLDYDYLVIAMGARSNTFNTPGVQEHAYFLKEVDDALRIRQKVVDLFEKASIPSISDEEKKKLLSFVIVGGGPTGVEFAAELHDFVHEDLSKLYPSLQRYVNITLLEAGDHILNMFDKRITEFAETKFKRDGIDVKLGSMVIKVSEREISAKDRVSGQVASIPHGMVVWSTGVGPRPEIIEFMKQVGQSNRRALATDEWLRVEGYDNIYALGDCATINQRKVMEDIALIFSKADKKNSGKLDLKEFQGVVDDIIERYPQVEIYLKKNQMKDIATLLKFSQDSSVTVDIESFKSALSNVDTQMKNLPPTAQVAAQQGAYLADCFNRMEICERYPEGPLRFRGTGRHRFHPFRYKHFGQFAPLGGEQTAAQLPGDWISIGHSTQWLWYSIYASKLVSWRTRALVVSDWGRRFVFGRDSSRI* 1101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1971 1100 Pfam Pyridine nucleotide-disulphide oxidoreductase 59 373 IPR023753 GO:0016491
Amo13g1971 1100 SUPERFAMILY FAD/NAD(P)-binding domain 214 368 IPR036188 -
Amo13g1971 1100 PANTHER NADH DEHYDROGENASE 5 464 IPR045024 GO:0003954|GO:0006116
Amo13g1971 1100 PANTHER NADH DEHYDROGENASE 563 1100 IPR045024 GO:0003954|GO:0006116
Amo13g1971 1100 PANTHER - 5 464 - -
Amo13g1971 1100 PANTHER - 563 1100 - -
Amo13g1971 1100 Pfam EF hand 378 400 IPR002048 GO:0005509
Amo13g1971 1100 Pfam EF hand 910 930 IPR002048 GO:0005509
Amo13g1971 1100 PRINTS FAD-dependent pyridine nucleotide reductase signature 746 764 - -
Amo13g1971 1100 PRINTS FAD-dependent pyridine nucleotide reductase signature 685 703 - -
Amo13g1971 1100 PRINTS FAD-dependent pyridine nucleotide reductase signature 582 601 - -
Amo13g1971 1100 Pfam Pyridine nucleotide-disulphide oxidoreductase 580 903 IPR023753 GO:0016491
Amo13g1971 1100 SUPERFAMILY FAD/NAD(P)-binding domain 747 899 IPR036188 -
Amo13g1971 1100 ProSitePatterns EF-hand calcium-binding domain. 384 396 IPR018247 -
Amo13g1971 1100 ProSiteProfiles EF-hand calcium-binding domain profile. 902 937 IPR002048 GO:0005509
Amo13g1971 1100 ProSiteProfiles EF-hand calcium-binding domain profile. 371 406 IPR002048 GO:0005509
Amo13g1971 1100 SUPERFAMILY EF-hand 371 974 IPR011992 -
Amo13g1971 1100 Gene3D - 569 931 - -
Amo13g1971 1100 Gene3D - 49 429 - -
Amo13g1971 1100 Gene3D - 946 1099 - -
Amo13g1971 1100 SMART efh_1 375 403 IPR002048 GO:0005509
Amo13g1971 1100 SMART efh_1 906 934 IPR002048 GO:0005509
Amo13g1971 1100 SUPERFAMILY FAD/NAD(P)-binding domain 58 267 IPR036188 -
Amo13g1971 1100 SUPERFAMILY FAD/NAD(P)-binding domain 580 798 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1971 Amo-Chr13 29822067 29836849 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1971 1 464 Chloroplast and Mitochondria Gene Families AT4G21490 58.281 0.0 548
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1971 K03885 - gmx:100790773 902.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g1971 13 29822067 29836849 Amo13g1971 13 29822067 29836849 ECH
Amo13g1971 13 29822067 29836849 Amo03g0658 03 12104469 12118951 hybridization