Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1960 ATGGGAAGAGTTCCTTGTTGTGACAAGAATGGTCTCAAGAAGGGTCCATGGACCCCGGAGGAAGATCTTAAACTTACCAACTACATTCAGACTCATGGCCCAGGAAATTGGCGCACCCTTCCCAAGAATGCTGGCCTTCAAAGATGTGGCAAGAGTTGTCGCCTAAGATGGACAAATTACCTGAGACCCGATATCAAGAGGGGAAGATTCTCTTTTGAAGAAGAGGAGGCTATTATTCAGTTGCATAGTGTATTGGGAAACAAATGGTCGGCAATAGCAGCAAGACTTCCAGGAAGAACTGACAACGAAATCAAGAACTATTGGAACACTCACATTAGGAAGAGGCTACTTCGGATGGGAATTGACCCAATTACCCATGCCCCACGCCTTGATCACCTTCTTGATGTGTCCTCCATTCTAAGGACACTCATTGCAAACCCTTCTTCTCTTCTGAGTCTCCAAGCCCTATTAACTCACCCTCAACCCTTTTTATTCAACCCTGAATTGCTTAAGCTATTAGCAGCTGCTACTACAACTCCTTCAACTCTTATGTCCACAAAAAATGACCAAAATAACCCTGATTTTGCATCGTCATCCTCATCTTCGTCGCAGAATATTAATAACAATAATAATGATATTCTACAACAAATCCTTGGTGGGAAGCTCAATCAGTTAGTTGCACCAAAAGAAGAGTTTGTTACTCATGGTCATTTTGAGACACCAATTTCAACAATTCAATGTAATGTGGAGGGCTTAATGGAAAATAATAATAATAATTTTAATGTTTTGCAACAAGATCAAGTTGGTTTCATAGGGAACCAGGATTTGGACAATAATAATATTGCAAACCAAAATAGTTTTGGTTATGATTCGGTGCTGTCAAGTCCAAATCAGATGAATTCATCATCCACCTATGTGAATAGCAGTGCGGAGGAAGAAAGCTATTGCAGTGAATTATTCAAGTTTCAGATTCCAGACACTCTGGATATTAGTGATTTTATGTAA 1005 0.401 MGRVPCCDKNGLKKGPWTPEEDLKLTNYIQTHGPGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEEAIIQLHSVLGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPITHAPRLDHLLDVSSILRTLIANPSSLLSLQALLTHPQPFLFNPELLKLLAAATTTPSTLMSTKNDQNNPDFASSSSSSSQNINNNNNDILQQILGGKLNQLVAPKEEFVTHGHFETPISTIQCNVEGLMENNNNNFNVLQQDQVGFIGNQDLDNNNIANQNSFGYDSVLSSPNQMNSSSTYVNSSAEEESYCSELFKFQIPDTLDISDFM* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1960 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Amo13g1960 334 CDD SANT 69 112 IPR001005 -
Amo13g1960 334 SMART sant 66 114 IPR001005 -
Amo13g1960 334 SMART sant 13 63 IPR001005 -
Amo13g1960 334 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Amo13g1960 334 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Amo13g1960 334 CDD SANT 16 61 IPR001005 -
Amo13g1960 334 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Amo13g1960 334 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Amo13g1960 334 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 329 - -
Amo13g1960 334 MobiDBLite consensus disorder prediction 183 209 - -
Amo13g1960 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Amo13g1960 334 PANTHER TRANSCRIPTION FACTOR MYB41 1 329 - -
Amo13g1960 334 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Amo13g1960 334 Gene3D - 13 66 - -
Amo13g1960 334 Gene3D - 69 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1960 Amo-Chr13 29681046 29683124 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1960 1 334 MYB Transcription Factor Family AT4G21440 46.933 1.67e-98 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo13g1960 Myb_DNA-binding 1.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1960 K09422 - gmx:102668351 371.318
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g1960 13 29681046 29683124 Amo13g1960 13 29681046 29683124 ECH
Amo13g1960 13 29681046 29683124 Amo03g0664 03 12235743 12237820 hybridization
Amo18g0936 18 14124765 14125884 Amo13g1960 13 29681046 29683124 PCT
Amo08g1120 08 18740974 18742146 Amo13g1960 13 29681046 29683124 PCT
Amo13g1960 13 29681046 29683124 Amo18g0936 18 14124765 14125884 PCT
Amo13g1960 13 29681046 29683124 Amo08g1120 08 18740974 18742146 PCT