Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1957 ATGGTTAGAACACCTTCTTGTGACAAGAGTGGATTGAGGAAAGGAACTTGGACTCCTGAGGAAGATAGGAAGTTAATTGCCTATGTTACTAGGTATGGTAGCTGGAATTGGCGCCAATTGCCTAAGTTTGCAGGACTGGCTAGGTGTGGGAAAAGTTGTAGATTGAGGTGGATGAATTACCTAAGGCCTAATCTCAAAAGAGGGAACTTCACTCAAGAGGAAGAAGCTTGCATAATCAAATTGCATTCTAAACTTGGAAATAGATGGTCTGCCATTGCTGCGGAACTACCTGGAAGAACTGATAACGAAATCAAGAACCATTGGCACACCACACTCAAGAAGCGCTTCCAAACCAATGAAGAAGAATCCGAAACCGCCACCAAATCCAAACCCAAAGAAACTACTCAGATCTCAGCAGAGAGCAACACTACTACTACTTCACCATTATCACCATTGTCATCTTCAAGTGAATTTTCCTCCATAACTTCCTGGGATCAAAGTCACAATAATAATAATAAGAACAATATGGTTCTTGAAGACGACGATTTCGCTTTTCTGGATGGAAGTTTCTGGACAGAACCATATCTTGCTGAAATCTTGCATGAACAAGAAACAGTAGTAACAGTGCCTAGTAGTACTAGCAATGTGTTTGATCCTTGTGAAATCTCAGTGGCCAATGAAAATGAAGAGTTGGAATTATCATCCAACAACAGTACGTCAAGTTTGTTTGATCTGGAGAAAGAGTTTGGGAGCTTCTTGATTGAACCAACAATGATGGAAAGTTTTTGGACCCAGCCATGTGTGTCTGAATCTGATGACGTGTCCCACATTCCTTTTATGCCTCCATCATCTGAATACTTTACAACGCTGTGTGGGTCAGATCCTTGGAGCACTCCAAGTACTACTCATTTGTATGATCAACATCTTAGCTTATTCCATTGA 942 0.4108 MVRTPSCDKSGLRKGTWTPEEDRKLIAYVTRYGSWNWRQLPKFAGLARCGKSCRLRWMNYLRPNLKRGNFTQEEEACIIKLHSKLGNRWSAIAAELPGRTDNEIKNHWHTTLKKRFQTNEEESETATKSKPKETTQISAESNTTTTSPLSPLSSSSEFSSITSWDQSHNNNNKNNMVLEDDDFAFLDGSFWTEPYLAEILHEQETVVTVPSSTSNVFDPCEISVANENEELELSSNNSTSSLFDLEKEFGSFLIEPTMMESFWTQPCVSESDDVSHIPFMPPSSEYFTTLCGSDPWSTPSTTHLYDQHLSLFH* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1957 313 CDD SANT 69 112 IPR001005 -
Amo13g1957 313 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Amo13g1957 313 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Amo13g1957 313 MobiDBLite consensus disorder prediction 114 163 - -
Amo13g1957 313 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 232 - -
Amo13g1957 313 MobiDBLite consensus disorder prediction 114 129 - -
Amo13g1957 313 CDD SANT 16 61 IPR001005 -
Amo13g1957 313 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Amo13g1957 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Amo13g1957 313 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Amo13g1957 313 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 232 - -
Amo13g1957 313 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Amo13g1957 313 MobiDBLite consensus disorder prediction 130 163 - -
Amo13g1957 313 Gene3D - 6 67 - -
Amo13g1957 313 SMART sant 13 63 IPR001005 -
Amo13g1957 313 SMART sant 66 114 IPR001005 -
Amo13g1957 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Amo13g1957 313 Gene3D - 69 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1957 Amo-Chr13 29594155 29595601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1957 1 193 MYB Transcription Factor Family AT2G31180 53.608 1.26e-65 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo13g1957 Myb_DNA-binding 8.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1957 K09422 - gmx:100777107 300.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g1957 13 29594155 29595601 Amo13g1957 13 29594155 29595601 ECH