Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1954 ATGGTGAGAACCCCTCATCGATGTGAGAAAAGTGGAGTGAGGAAAGGAACATGGACACCTGAGGAAGATACCAAGTTGATTGCTCATCTCACTAGGTTTGGTCACCCCACCAATTGGCGCCAACTACCCAGAGCTGCAGGTCTTGCAAGGTGTGGAAAGAGCTGCAGATTAAGGTGGATGAATTATTTAAGGCCAGATGTCAAAAGAGGGAATTATACACAAGAAGAAGATGACACTATAGTCAAACTACACAATCAGTTTGGTAATAGATGGTCCATGATTGCGTCTCACTTACATGGAAGATCAGACAACGAGATAAAGAATCGGTGGCACTCCCAACTTAAGAAGCGATTCCAACACACTTCAGCCTCCAATTCAAATAATCATAATGCCTTAATTGAATCAACAGAAGAAGACATAGTGAATAATAATCATAATAATAATGCCACTACAAATGAATACCCTTATAGTAATCTTCACAACACTACTTCTCCAGCTTCTTCTCAAAGCGATACATATGACAATTTTTCTCCATTGAGTGACTTTTTCTACACACCTGCGGTGGATCTTGCTGCACCATTTGGTAATAACTCGGTTTTGGCTATTGATAATGATGATCACTATGCTAATTTCCTGGATAATATGGTACACAGTAACATAGTGCCAATTGGTGCAGATTATGTTTGGACTCAACAGGATTATTCAAGTCCAATCTATGAGGTACAACTTTGGGGTCTATAG 741 0.3995 MVRTPHRCEKSGVRKGTWTPEEDTKLIAHLTRFGHPTNWRQLPRAAGLARCGKSCRLRWMNYLRPDVKRGNYTQEEDDTIVKLHNQFGNRWSMIASHLHGRSDNEIKNRWHSQLKKRFQHTSASNSNNHNALIESTEEDIVNNNHNNNATTNEYPYSNLHNTTSPASSQSDTYDNFSPLSDFFYTPAVDLAAPFGNNSVLAIDNDDHYANFLDNMVHSNIVPIGADYVWTQQDYSSPIYEVQLWGL* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1954 246 CDD SANT 17 63 IPR001005 -
Amo13g1954 246 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Amo13g1954 246 Gene3D - 6 69 - -
Amo13g1954 246 SUPERFAMILY Homeodomain-like 12 110 IPR009057 -
Amo13g1954 246 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 63 IPR017930 -
Amo13g1954 246 CDD SANT 71 111 IPR001005 -
Amo13g1954 246 SMART sant 68 116 IPR001005 -
Amo13g1954 246 SMART sant 14 65 IPR001005 -
Amo13g1954 246 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Amo13g1954 246 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 169 - -
Amo13g1954 246 ProSiteProfiles Myb-like domain profile. 10 63 IPR001005 -
Amo13g1954 246 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 169 - -
Amo13g1954 246 Gene3D - 71 148 - -
Amo13g1954 246 Pfam Myb-like DNA-binding domain 69 113 IPR001005 -
Amo13g1954 246 Pfam Myb-like DNA-binding domain 15 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1954 Amo-Chr13 29408721 29410548 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1954 1 139 MYB Transcription Factor Family AT2G31180 56.738 1.20e-52 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo13g1954 Myb_DNA-binding 4.3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1954 K09422 - gmx:106799185 211.075
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g1954 13 29408721 29410548 Amo03g0681 03 12552686 12554147 hybridization
Amo13g1954 13 29408721 29410548 Amo08g1130 08 18855398 18856411 PCT