LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo13g1952	ATGAGGTTGAATTACATCTACAATTTCTCCTTCCATGATGAAGCTGATGAGGCTTACTTCACTTACACGGTGTATAACTCTTCGATTCTTTCGCGGTTCGTGATGGATGTCTCCGGGCAGATCAAGCAGCTTTCATGGCTGGACAATACACAGAATTGGAACTTGTTTTGGTCTCAACCAAGGCAGCAGTGTGAGGTTTACACCTTCTGCGGCGCGTTTGGGAGCTGTACTGAGAATTCTATGCCTTACTGTACTTGTTTGACAGGCTATGACCCAAGTAATTCATCTAACTGGAACTTAGAGGATTACTCAAGTGGATGCAAGAGAAGAACAAAGTTCCAATGCGAGACGGCGAATCCTAACAGTGGTGCAAAGGACAGGTTTATGGCGTTTCCAAACATGGCAGTGCCTAATAATTCTGTAGCTTTGAGTGCAGGGAATGCAGAGGAATGTGCTTCATCCTGCTTGAACCAATGTTCTTGCACTGCTTACGCCTTTAACAGTAAAGGTTGTTCGGTTTGGAAGGGTGATCTCTTGAATCTTCAGCAGCTTACTCAAGGAGATAGCAGTGGACAAACCTTGTTTTTAAGGCTTGCTGCTTCTGAATTTCATGATAGTAAGAGCAACAAGGGGACAATAATCGGCGCAGTCGCAGGTGGCGTTGGCGCCATAGTGGTAGTCCTTGCAGCCCTTATCTGTTTCTTGGTGAGGAGAAGGAGGCGAATTCAAACCGGGACAACCATGGAGGGTTCTTTGGTGGCTTTTGCATACAGAGATTTGCAAAATGCGACAAAGAACTTCTCTGAGAAACTTGGAGGAGGAGGATTTGGTTCTGTTTTCAAAGGAACACTGTCTGATTCCAGTGTCATAGCAGTGAAGAAGCTTGAGAGCATCAGCCAAGGCGAGAAGCAGTTCCGGACGGAAGTTAGCACAATTGGGACAGTCCAGCATGTGAATCTTGTTAGGCTCCGCGGCTTCTGCTCCCAAGGCACAAGGAAGCTTCTAGTCTACGATTTCATGCCTAATGGCTCTTTAGATTCAAGTTTGTTTCATGAGAAGGACTCCAAGGGGTTGGATTGGAAAACAAGGTACCAAATCGCACTTGGGACAGCCAGGGGACTAACTTATCTCCACGAGAAGTGCAGAGATTGCATCATACACTGCGATGTGAAGCCGGAAAACATACTCTTAGACGCCGAATTTTGTCCGAAAGTGGCAGATTTCGGCCTAGCAAAGCTTGTGGGAAGGGACTTCAGCAGAGTCCTTACAACAATGAGAGGAACAAGGGGATACCTTGCGCCGGAGTGGATTTCCGGAGTGCCTATAACAGCGAAAGCAGATGTATACAGCTATGGAATGATGCTATTTGAATTGGTGTCAGGTAGGAGGAACTCCGAGCCGTCAGAAGATGGACAAGTCCGATTCTTCCCTACAACTGCGGCCTACACGGTGAACCAAGGTGGCAATGTTCTTGACCTATTGGACCCAAAGTTGGAGGGAAATGCTGAGATTGATGAGGTGGTTAGAGTGATCAAAGTTGCTTCCTGGTGCGTACAAGATGATGAGGCTCAAAGGCCTTCCATGGGTCAAGTTGTTCAAATTCTTGAAGGGCTTTTGGATGCTTCTTTTCCTCCAGTTCCAAGGTCACTACAGGCATTTGTTGAGAACCAAGAACACATTGTTTTCTTCACTGATTCAAGCTCTACACAGAGTTCACAAGCCAAAAGCAATGTCTCCACAACTTCTTCTCAAGCCAAAAGCAATGTGTCTTCTACAAGCCAGCAACAGCAAGATTAG	1797	0.463	MRLNYIYNFSFHDEADEAYFTYTVYNSSILSRFVMDVSGQIKQLSWLDNTQNWNLFWSQPRQQCEVYTFCGAFGSCTENSMPYCTCLTGYDPSNSSNWNLEDYSSGCKRRTKFQCETANPNSGAKDRFMAFPNMAVPNNSVALSAGNAEECASSCLNQCSCTAYAFNSKGCSVWKGDLLNLQQLTQGDSSGQTLFLRLAASEFHDSKSNKGTIIGAVAGGVGAIVVVLAALICFLVRRRRRIQTGTTMEGSLVAFAYRDLQNATKNFSEKLGGGGFGSVFKGTLSDSSVIAVKKLESISQGEKQFRTEVSTIGTVQHVNLVRLRGFCSQGTRKLLVYDFMPNGSLDSSLFHEKDSKGLDWKTRYQIALGTARGLTYLHEKCRDCIIHCDVKPENILLDAEFCPKVADFGLAKLVGRDFSRVLTTMRGTRGYLAPEWISGVPITAKADVYSYGMMLFELVSGRRNSEPSEDGQVRFFPTTAAYTVNQGGNVLDLLDPKLEGNAEIDEVVRVIKVASWCVQDDEAQRPSMGQVVQILEGLLDASFPPVPRSLQAFVENQEHIVFFTDSSSTQSSQAKSNVSTTSSQAKSNVSSTSQQQQD*	599

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo13g1952	598	SMART	ntp_6	123	198	IPR003609	-
	Amo13g1952	598	CDD	STKc_IRAK	271	538	-	-
	Amo13g1952	598	PANTHER	S-LOCUS LECTIN KINASE FAMILY PROTEIN	1	565	-	-
	Amo13g1952	598	CDD	PAN_AP_plant	123	199	-	-
	Amo13g1952	598	ProSiteProfiles	PAN/Apple domain profile.	115	199	IPR003609	-
	Amo13g1952	598	Pfam	Protein kinase domain	268	533	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Amo13g1952	598	ProSiteProfiles	Protein kinase domain profile.	265	539	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Amo13g1952	598	MobiDBLite	consensus disorder prediction	565	598	-	-
	Amo13g1952	598	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	385	397	IPR008271	GO:0004672\|GO:0006468
	Amo13g1952	598	Gene3D	Transferase(Phosphotransferase) domain 1	340	543	-	-
	Amo13g1952	598	Pfam	PAN-like domain	123	180	IPR003609	-
	Amo13g1952	598	SMART	serkin_6	265	543	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Amo13g1952	598	Gene3D	Phosphorylase Kinase; domain 1	232	339	-	-
	Amo13g1952	598	SUPERFAMILY	Hairpin loop containing domain-like	125	183	-	-
	Amo13g1952	598	SUPERFAMILY	Protein kinase-like (PK-like)	252	569	IPR011009	-
	Amo13g1952	598	Pfam	S-locus glycoprotein domain	4	93	IPR000858	GO:0048544
	Amo13g1952	598	ProSitePatterns	Protein kinases ATP-binding region signature.	271	294	IPR017441	GO:0005524
	Amo13g1952	598	PANTHER	G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE PLANT	1	565	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo13g1952	Amo-Chr13	29310191	29311987	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo13g1952	222	545	Receptor kinase-like Gene Family	AT5G20050	39.889	1.26e-79	256

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_SD-2b	Amo13g1952		Pkinase	7.6e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo13g1952	-		-	adu:107477835	1077