Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1950 ATGGTAACTTGTGACATGCCATATTGTTTCAACAACATGATGGAGCCATGCTTCTTGCTTTCTCTTTTCATCATCATATGCTTCTCTTTTCACCCTTACAATTCCCATGCAGCTTTGATTTCAATCACTGCAAACCAATCTCTCAGTGGTGATCAAACACTTGTCTCCAAAGATGAAAATTTTGAATTGGGTTTCTTCAAACCAGGTAACTCCTCTAACTACTACATAGGAATGTGGTACAAAAAAAGAGTCTCTCAAAGAACCTATGTTTGGGTAGCAAATAGAGATAACCCAGTTTCTGATAAAAATTCTGCAAAGTTGACAATATCTAAGGGTAACTTAGTACTCTTGGATCAGTCCCAAAATCAAGTTTGGTCAACAAATTTGAATTCTCCAAACTTAGATTCTTTAGTAGCTGTGCTTCTAGATAATGGGAATCTTATACTGAGTGATAGGCCTAATCCATCAGAATCAAATTCTCTATGGCAAAGTTTTGATCATCCAACAGATACATTCCTTCCTGGAGCCAAACTTAAGCTTGATAACAAAACCAAGAAGCCTCAATATCTCACTTCATGGAAGAGCACCGAAGATCCGGGTACGGGCTTGTACTCTTTGGAACTAGACCCTAAAGGAAGCGAAGCTTACTTGATCCTTTGGAACAAAACTGTAGAATATTGGACTAGTGGACCTTGGAATGGTCAAATTTTCAGCGGGGTGCCTGAAATGAGGTTGAATTACATCTACAATTTCTCCTTCCATGATGAACCTGATGAGGCTTACTTCACTTACACGGTGTATAACTCTTCGATTCTTTCGCGGCTCGTGATGGATGTCTCCGGGCAGATCAAGCAGCTTTCGTGGCTGGACAATACACAGAATTGGAACTTGTTTTGGTCTGAACCAAGGCATCAGTGTGAGGTTTACACCTTCTGCGGCGCGTTTGGGAGTTGTACTGAGAATTCTATGCCTTACTGTAATTGTTTGACAGGCTATGAGCCAAGTAATTCATCTAACTGGAACTTAGAGGATTACTCAAGTGGATGCAAGAGAAGAACAAAGTTCCAATGCGAGACGGCGAATCCTAATGGTGGTGCAAAGGACAGGTTTATGGCATTTCCAAACATGGGATTGCCTTCACCTGCACAACATGTAAGTGCTGGGGATGCAGAGGAATGCGCTTCAACTTGCTTAGAGGACTGTTCTTGCACAGTATATGCATATGGCAATAAAGGTTGTGTAATTTGGAATGGTGACCTCTTGAATTTGCAGCAGCTTTCTCAAGATGATAGTAACGGAGAAACCATGTTTCTCAAGCTTGCAGCATCTGAATTTGATGATCCTAAGAGCAGCAAGAGGAGAACCATTGGTGCTGTTGCAGGTGCTATTGGTGGCATGGTGATTATCCTAGCACTTACTCTATTTTTCTTGGTGAGGAGAAGGAGACAAGTTCAATCAGGAACGTTGGTTGAAGGCTCATTGAAGACATTTGGATACAGAGATTTGCAAATTGCTACAATGAATTTCTCAGATAAATTGGGAGGAGGAAGTTTTGGTTCTGTCTTCAAGGGGACACTGCCAGATTCAAGTGTCATAGCAGTGAAGAAGCTCGAAAACATTAGCCAAAGTGAGAAACAGTTCCGGACAGAAGTGAGCACAATTGGGACAGTCCAGCATATCAATCTGGTTAGGCTCCGCGGATTCTGTTCCGAAGGTACTAGAAAACTTCTAGTCTATGATTACATGCCAAATGGCTCCTTGGATTCAAACTTGTTTCATGAGAAGGGATTCAAGTCCAAGGTGTTGGAATGGAAAGAAAGGTACCAAATTGCTCTTGGGACAGCTAGAGGACTGGCTTATCTCCATGAGAAGTGTAGAGACTGCATCATACACTGCGACGTGAAGCCGGAAAACATTCTTTTAGATGCTGATTTTTGTCCAAAAGTGGCACATTTTGGCCTTGCAAAGCTGGTTGGAAGGGAAGTTGGCCAGGTCCTAACAACCATGAGAGGAACAAGGGGATACCTCGCTCCAGAATGGAATTCTGGGGTGCCTGTAACTGCCAAAGCCGATGTCTATAGTTATGGAATGATGCTGTTCGAGTTTGTGTCCGGTAAGAGGAACTCAGATCCCCCAGAAGATGGACAAGTTAGGTTCTTCCCTACATGGGCGGCAAAAACAGCAAGCGAAGGCGGCAATGTGCTTAGCCTTTTGGATCCAAAGTTGAAGGGAAATGCTAACATCGAAGAGGTCATTCGAGTCATCAAAATCGCTTCTTGGTGTGTCCAAGATGATGAGATTCATAGGCCATCCATGAGTCAGGTAGTTCACATCCTTGATGGTGTGTTAGATGTGGCTTTTCCTCCTGTGCCAATATTCCTACAAGCCTTTCTTGAGAACCAAGAAACTACAGTTTTCTTCATTGAATCAGGCTCTAATCAGAGTTCACATATGAAAAGCTCCACAACCTCCTCTTAG 2478 0.427 MVTCDMPYCFNNMMEPCFLLSLFIIICFSFHPYNSHAALISITANQSLSGDQTLVSKDENFELGFFKPGNSSNYYIGMWYKKRVSQRTYVWVANRDNPVSDKNSAKLTISKGNLVLLDQSQNQVWSTNLNSPNLDSLVAVLLDNGNLILSDRPNPSESNSLWQSFDHPTDTFLPGAKLKLDNKTKKPQYLTSWKSTEDPGTGLYSLELDPKGSEAYLILWNKTVEYWTSGPWNGQIFSGVPEMRLNYIYNFSFHDEPDEAYFTYTVYNSSILSRLVMDVSGQIKQLSWLDNTQNWNLFWSEPRHQCEVYTFCGAFGSCTENSMPYCNCLTGYEPSNSSNWNLEDYSSGCKRRTKFQCETANPNGGAKDRFMAFPNMGLPSPAQHVSAGDAEECASTCLEDCSCTVYAYGNKGCVIWNGDLLNLQQLSQDDSNGETMFLKLAASEFDDPKSSKRRTIGAVAGAIGGMVIILALTLFFLVRRRRQVQSGTLVEGSLKTFGYRDLQIATMNFSDKLGGGSFGSVFKGTLPDSSVIAVKKLENISQSEKQFRTEVSTIGTVQHINLVRLRGFCSEGTRKLLVYDYMPNGSLDSNLFHEKGFKSKVLEWKERYQIALGTARGLAYLHEKCRDCIIHCDVKPENILLDADFCPKVAHFGLAKLVGREVGQVLTTMRGTRGYLAPEWNSGVPVTAKADVYSYGMMLFEFVSGKRNSDPPEDGQVRFFPTWAAKTASEGGNVLSLLDPKLKGNANIEEVIRVIKIASWCVQDDEIHRPSMSQVVHILDGVLDVAFPPVPIFLQAFLENQETTVFFIESGSNQSSHMKSSTTSS* 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1950 825 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 17 807 - -
Amo13g1950 825 SMART ntp_6 365 440 IPR003609 -
Amo13g1950 825 CDD PAN_AP_plant 363 441 - -
Amo13g1950 825 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE PLANT 17 807 - -
Amo13g1950 825 PIRSF SRK 11 825 IPR024171 GO:0004674
Amo13g1950 825 CDD B_lectin 45 168 IPR001480 -
Amo13g1950 825 SUPERFAMILY alpha-D-mannose-specific plant lectins 89 199 IPR036426 -
Amo13g1950 825 ProSiteProfiles Protein kinase domain profile. 507 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g1950 825 ProSiteProfiles Bulb-type lectin domain profile. 39 162 IPR001480 -
Amo13g1950 825 Pfam PAN-like domain 366 422 IPR003609 -
Amo13g1950 825 CDD STKc_IRAK 513 781 - -
Amo13g1950 825 Pfam Protein kinase domain 510 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g1950 825 SMART blect_4 45 168 IPR001480 -
Amo13g1950 825 ProSitePatterns Serine/Threonine protein kinases active-site signature. 629 641 IPR008271 GO:0004672|GO:0006468
Amo13g1950 825 Gene3D Transferase(Phosphotransferase) domain 1 582 786 - -
Amo13g1950 825 Pfam S-locus glycoprotein domain 227 335 IPR000858 GO:0048544
Amo13g1950 825 Pfam D-mannose binding lectin 88 194 IPR001480 -
Amo13g1950 825 SUPERFAMILY Hairpin loop containing domain-like 365 427 - -
Amo13g1950 825 SMART serkin_6 507 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g1950 825 Gene3D Phosphorylase Kinase; domain 1 475 581 - -
Amo13g1950 825 ProSiteProfiles PAN/Apple domain profile. 357 441 IPR003609 -
Amo13g1950 825 ProSitePatterns Protein kinases ATP-binding region signature. 513 536 IPR017441 GO:0005524
Amo13g1950 825 Gene3D - 36 166 IPR036426 -
Amo13g1950 825 SUPERFAMILY Protein kinase-like (PK-like) 494 814 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1950 Amo-Chr13 29303229 29305953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1950 448 785 Receptor kinase-like Gene Family AT1G56120 43.103 2.72e-69 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Amo13g1950 Pkinase 4.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1950 - - adu:107477835 1282.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g1950 13 29303229 29305953 Amo13g1950 13 29303229 29305953 ECH
Amo13g1950 13 29303229 29305953 Amo03g0696 03 12865683 12868256 hybridization
Amo08g1133 08 18889160 18892692 Amo13g1950 13 29303229 29305953 PCT
Amo13g1950 13 29303229 29305953 Amo08g1133 08 18889160 18892692 PCT