Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1932 ATGATGGACGGATATGAAAACCATGGAGAATGCAGGGCCTTAAATATTTACTCTCTCACATGCACGGCCATACATAACATAGAAATCACACTCAGAAAGGGTGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGAGGAGGTCCGTTTGATATCAAAAAATTACTCAGCAACAATCGGACAAGTGGGGAATGTTGGGGTAAACCAGAAAACTTTGGGTAGAGCCGGATCTAAATGTTGGCTAGGTAAGCGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGGGGTGGTGAAGGGAGAGCCCCAATTGGTAGAAAAAAAACCCGCAACTCCTTGGGGTTATCCTGCACTTGGAAGAAGAAGTAGAAAAAGGAATAAATATAGTGATAATTTGATTCTTCGTCGCCGTACCAATCATCTATTAAGAAAAATAAAAAAGCTTAACACAAAAGCAGAAAAAGAAATAATAATAACTTGGTCCAGAACATCTACCATTATCCCCACAATGATTGGCCATACCATTGCTATCCATAATGGAAAAGAATATTTACCTATTTATATAACAGATCGTATGGTAGGCCATAAATTGGTGAATTTTCACCTACTCTAA 657 0.3957 MMDGYENHGECRALNIYSLTCTAIHNIEITLRKGGQLARAAGAVAKLIAKEGKSATLKLPSEEVRLISKNYSATIGQVGNVGVNQKTLGRAGSKCWLGKRPVVRGVVMNPGVVKGEPQLVEKKPATPWGYPALGRRSRKRNKYSDNLILRRRTNHLLRKIKKLNTKAEKEIIITWSRTSTIIPTMIGHTIAIHNGKEYLPIYITDRMVGHKLVNFHLL* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1932 218 PANTHER 39S RIBOSOMAL PROTEIN L2, MITOCHONDRIAL 21 151 - -
Amo13g1932 218 PRINTS Ribosomal protein S19 family signature 194 206 IPR002222 GO:0003735|GO:0005840|GO:0006412
Amo13g1932 218 PRINTS Ribosomal protein S19 family signature 174 193 IPR002222 GO:0003735|GO:0005840|GO:0006412
Amo13g1932 218 PRINTS Ribosomal protein S19 family signature 206 218 IPR002222 GO:0003735|GO:0005840|GO:0006412
Amo13g1932 218 Hamap 30S ribosomal protein S19 [rpsS]. 134 218 IPR002222 GO:0003735|GO:0005840|GO:0006412
Amo13g1932 218 PANTHER RIBOSOMAL PROTEIN L2 21 151 IPR002171 GO:0003735|GO:0005840|GO:0006412
Amo13g1932 218 Pfam Ribosomal protein S19 152 216 IPR002222 GO:0003735|GO:0005840|GO:0006412
Amo13g1932 218 Pfam Ribosomal Proteins L2, C-terminal domain 21 110 IPR022669 GO:0003735|GO:0005840|GO:0006412
Amo13g1932 218 Gene3D 30s Ribosomal Protein S19; Chain A 135 218 IPR023575 GO:0003735|GO:0005840|GO:0006412
Amo13g1932 218 SMART Ribosomal_L2_C_2 11 131 IPR022669 GO:0003735|GO:0005840|GO:0006412
Amo13g1932 218 Gene3D - 7 80 IPR014722 -
Amo13g1932 218 SUPERFAMILY Translation proteins SH3-like domain 22 151 IPR008991 -
Amo13g1932 218 SUPERFAMILY Ribosomal protein S19 152 215 IPR023575 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1932 Amo-Chr13 29103338 29106487 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1932 24 110 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 39.796 2.55e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1932 K02886 - ghi:121226617 223.016