Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1930 ATGAAAGGAATATCCTATCGGGGTAATCATATTTGCTTCGGAAGATATGCTCTTCAGGCACTTGAACCCGCTTGGATCACATCTAGACAAATAGAAGCAAGTCGACGGGCAATGTCACGAAATATCCGCCGAGCCGATAACAGCGGAGCCCGCCAATTGATGTGTATTCGAATCATAGGAGCAGGTAATCGACGATATGCTTCTATTGGTGACATTGTTGTTGCTGTAATCAAGGAAGCGGTACCAAATATGTCTTTAGAAAGATCAGAAGTGATTAGAGCTGTAATTGTACGTACTTGTAAAGAACTTAAACGTAGCAATGGCATGATAATACAGTATGATGATAATGCCGCGGTTGTCATTGATCAAGAGGGAAATCCAAAAGGAACTCGAATTTTTGGCGCAATCGCCCGGGAATTGAGATAG 426 0.4249 MKGISYRGNHICFGRYALQALEPAWITSRQIEASRRAMSRNIRRADNSGARQLMCIRIIGAGNRRYASIGDIVVAVIKEAVPNMSLERSEVIRAVIVRTCKELKRSNGMIIQYDDNAAVVIDQEGNPKGTRIFGAIARELR* 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1930 141 PANTHER RIBOSOMAL PROTEIN L14B/L23E-RELATED 42 141 - -
Amo13g1930 141 CDD Ribosomal_L16_L10e 7 44 IPR016180 GO:0003735|GO:0005840|GO:0006412
Amo13g1930 141 SMART Ribosomal_L14_2 41 141 IPR000218 GO:0003735|GO:0005840|GO:0006412
Amo13g1930 141 Pfam Ribosomal protein L14p/L23e 42 141 IPR000218 GO:0003735|GO:0005840|GO:0006412
Amo13g1930 141 TIGRFAM rplN_bact: ribosomal protein uL14 41 141 IPR005745 GO:0003735|GO:0006412|GO:0015934
Amo13g1930 141 SUPERFAMILY Ribosomal protein L14 42 141 IPR036853 GO:0003735|GO:0005840|GO:0006412
Amo13g1930 141 ProSitePatterns Ribosomal protein L14 signature. 94 120 IPR019972 -
Amo13g1930 141 PRINTS Ribosomal protein L16 signature 8 20 IPR000114 GO:0003735|GO:0006412|GO:0019843
Amo13g1930 141 PRINTS Ribosomal protein L16 signature 26 37 IPR000114 GO:0003735|GO:0006412|GO:0019843
Amo13g1930 141 Hamap 50S ribosomal protein L14 [rplN]. 30 141 IPR000218 GO:0003735|GO:0005840|GO:0006412
Amo13g1930 141 Gene3D Ribosomal protein L14 30 141 IPR036853 GO:0003735|GO:0005840|GO:0006412
Amo13g1930 141 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 42 141 IPR000218 GO:0003735|GO:0005840|GO:0006412
Amo13g1930 141 Pfam Ribosomal protein L16p/L10e 2 48 IPR016180 GO:0003735|GO:0005840|GO:0006412
Amo13g1930 141 SUPERFAMILY Ribosomal protein L16p/L10e 1 45 IPR036920 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1930 Amo-Chr13 29100049 29100865 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1930 45 139 Cytoplasmic Ribosomal Protein Gene Family AT1G04480 37.374 8.12e-16 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1930 K02874 - dct:114579343 236.498