Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1924 ATGTTTCCTTCCACTACTTACAGTTACAGCACTGGCCCTTACCCTTGCTTCCCTTCATCTTCTTCTTCATATCCTCTTTTTCCTTTTCTGAACCCTGAGAACAATGCTTCTTCTTCTTCTGCAACAACCGCCACTAACAACAACAACAATAATCTCCTTCATGATCCATCGCTCTGCGTTCCTTACATTCCAATCCCTGAAGCACTAACCAATTTGGCAACAGTTGTAGATAACACTASTAATCTTGCTGCATCTTCATCAATGCCCAAACAACAGGACCTCAACGGTGGCGGTGGCGGAGGTGCTCATCATCACTTCGGCATATCCAGTTTGCTCYCGAAGAAACCGGCGGCGGCGAAGAAAGATAGGCACAGCAAGATTTACACTGCTCAGGGGCTGAGGGACCGAAGGGTGAGGCTGTCGATTGAGATCGCGCGCAAGTTCTTCGATCTCCAAGACATGCTAGGGTTTGATAAGGCCAGCAACACGCTCGACTGGCTCTTCACCAAGTCCAAGAAAGCCATTAAGGAGCTTGCCAGGAGCAAGAACCACAGCGCCAGTGACGAAGCCGAAGCCAAAGCCGGTGCCGGTGCCGGTGCCAATAACAAGAGTTTCGCCTCGTCCTCTGACTGCGAAGAAGATGACTTTGAAGTACTTTCTAGAAACAACCACCACCGCCACCAACAAGGGTCAGATGCCAGGGAGAGGAAGCTGAAAAATGCACAACAGAAAGAAGCAAGTGCTTGTAATGTGAGGGCAAAGATGAAGGAGTCAAGGGAGAAAGCAAGAGCAAGAGCAAGAGAAAGGACTAGTAACAAGATGTGTAACAGCATAATGGGAAATTCTTCTTCTTCTTCCGGGAAGGTTCTAGAATTYAAGAAAAGATGCCCTGCACCTAGTGAAAACCCTCACCACCTAGGTGGTGCTGAAGTTTCACAAACTAGAGATGACTTCAACGTTATTGAGGAATCCATTGTGATCAAGAGGAAGTTYAAGCAGCCATCTATGATGTCATCCTCGCATCACCATCACCATCACCACCACCAATTAAACCTTCCCATCCCTAATAATAATAATAAGGAAGCAAGTTTCAACAACAACAGTGATAATAATTACCATCCTGGAAACTACACCAATTTGTCACCAAATTGGGATAATGCTAATGGACCAGCCTCATCAGCTAATAACCGCTCCAACTTCTGTGCAATAGCCAGCATGAATCTCTCTACAGGGCTACAAATCTTTGGAAAGTCATGGGAGGAATGCACCAATCCATCACGTCTGCACTAG 1290 0.4636 MFPSTTYSYSTGPYPCFPSSSSSYPLFPFLNPENNASSSSATTATNNNNNNLLHDPSLCVPYIPIPEALTNLATVVDNTXNLAASSSMPKQQDLNGGGGGGAHHHFGISSLLXKKPAAAKKDRHSKIYTAQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLDWLFTKSKKAIKELARSKNHSASDEAEAKAGAGAGANNKSFASSSDCEEDDFEVLSRNNHHRHQQGSDARERKLKNAQQKEASACNVRAKMKESREKARARARERTSNKMCNSIMGNSSSSSGKVLEFKKRCPAPSENPHHLGGAEVSQTRDDFNVIEESIVIKRKFKQPSMMSSSHHHHHHHHQLNLPIPNNNNKEASFNNNSDNNYHPGNYTNLSPNWDNANGPASSANNRSNFCAIASMNLSTGLQIFGKSWEECTNPSRLH* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1924 429 MobiDBLite consensus disorder prediction 208 242 - -
Amo13g1924 429 MobiDBLite consensus disorder prediction 86 107 - -
Amo13g1924 429 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 23 427 IPR005333 GO:0003700
Amo13g1924 429 Pfam TCP family transcription factor 119 276 IPR017887 -
Amo13g1924 429 ProSiteProfiles TCP domain profile. 120 178 IPR017887 -
Amo13g1924 429 MobiDBLite consensus disorder prediction 335 350 - -
Amo13g1924 429 MobiDBLite consensus disorder prediction 335 392 - -
Amo13g1924 429 MobiDBLite consensus disorder prediction 351 392 - -
Amo13g1924 429 MobiDBLite consensus disorder prediction 295 315 - -
Amo13g1924 429 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 23 427 - -
Amo13g1924 429 ProSiteProfiles R domain profile. 256 273 IPR017888 -
Amo13g1924 429 MobiDBLite consensus disorder prediction 186 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1924 Amo-Chr13 28984313 28986901 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1924 118 275 TCP Transcription Factor Family AT1G67260 43.713 3.18e-31 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Amo13g1924 TCP 7.2e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1924 - - gmx:100801549 320.857