Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1920 ATGGTAGACACCAAGAGATTCTGTTCTAACCGCATGCTGTTTTTCTTCCTTTTGTGTTCATTCTTTTGCACTTGCATGCATTGTTATGGTAGAGATACCATAACCATTAACAATTTCTTACTAGATGGAGGAGGAGGAGGAGGAGATACTCTAGTTTCTGATGGAGAAAACTTTGAGCTGGGATTTTTCACCCCTAATGGAAGCTCTAGTGGAAGAAGAAGATATATTGGAATATGGTACTACAATTTGAGTCCAAGAACAGTTGTGTGGGTGGCTAATAGGGACACCCCTCTTGAAGATTCCGGCGGCGCTTTCGGCATTTCAGAAGACGGTAATCTCAGGGTTCTGGACAGAAATGGGAGACCCTTTTGGGGGACAAGTCTTGAAACATCATCAAATTCATCACTTCACAGAACACTGAAGCTAATGGACAATGGTAACCTCATTGTAATTGATGAACAAGACGAAGAAGAAACCAAGAAAACAAAGATCCTTTGGGAGAGTTTTGCTAATCCAACAGATACATTCCTTCCAGGGATGAAAATGTATCAGGGTWTATCATTAACTTCKTGGCRAAGCAAYGTCGACCCTTCGCCGGGGAACTACTCTTTCCAGCGAGATCAAGAAGATAGCAACAACAACAACGACCAATACATGATATGGAAGAGATCCRTAAGGTATTGGAAAAGCAGTGTGACAGGTAAGGTAGTGGGAACAGGTGAAATGTCTTTAGCAATATCATATTTTCTTTCAAATTTCACTGAGAAGATTTCCCAAAACTACAACAACACTGTCCCTTTTCTCACTTCTTCACTTTATAGCAACACAAGGTTGGTTATCACTTACTGGGGTCAGCTTCTGTATCTAAAGATGGATTCAGAGAAAACTTGGTCTAATGTTTGGGTTGAGCCTAGAGACAGATGCAGTGTGTTCAATGCCTGCGGAAATTTCGGAAGCTGTAATAGCAAGTATCATGCTATGTGTAAGTGCTTGCCAGGGTTCAGGCCTAGCTCTCTTGAGACTTGGGATGCCGGTGATTTTTCCCGTGGATGCAGCCGGAAAACTAACGTGTGCGGCGAGGATGCGAAGAGTGACACTTTCTTGAGGCTGAAAATGATGAAAGTTGGGAATCCAGATGCTCAGTTTAAGGCCAAGAGTGAAGAGGAATGCAAGGCAGAGTGCCTCAACAACTGCCAATGCTATGCGTATTCGTATGAAGACGATCAGACCGGAGGCAGCGAGGGCGGTAGCAGCCGCAGCAGTGGTGATGCGGTTTGCTGGATTTGGTCTGAGGACCTTAACAATCTTGAAGAAGATTATGAGAATGGCTGCGACCTCAATGTCCGTGTTGCGCTTTCTGATATAGAATCCACAGGRAAGAGTTGTGGAACTTGTGGCACAAACTTGATTGCATATCCCCTGAGCAGAGGAGCAAATTGTGGTGACCCAATGTAYTTGAGTTTCCATTGCAATGACTCCACAGGCCAGCTTGATTTCGAGACGCCAGGGGGTGCTTTTCGCGTGATAAGCATAGATCAGGACAAGCGAAAATTTGTTATTCACATTGAAGATGTAGAAAAYTGTGAAGRTCAAACATCAAGGGACAACAAGAAGCTTCTGCTTCTCAATGATTCATCTCCATTTCATCTTACTGGCACTTGCTATGCTGATCCAAGAACCTTTACTTCTGCTGCTCCAATGAAACATGGAGTAGAGTTGGAACTGAGTTGGGATCCGCCGTCCGAGCCACTTTGCTCCACCTTGCTGGATTGCATGGATTGGCCAAATTCAAGTTGCAATACCACAAGTGATAGCAACAAGAGGTGCCTTTGCAACAGTAACTATTTTTGGGATGGCATGAAATTGAACTGTACTAATGGCAATCAAAGCTACCAAGCAGACAGGAATCTATCCTTAACTCAGATCATGGAAATCACTTTTACAATTGTGATTGCCATCATTCTTCTCTCAAGTACTGTTATATACATCTACTTGAAGAAAAGGAGACATGCTAATTCACAAGAAATCAGGGGATATACTCAGAAGAATCCAGGCCTTAGCAGTGAGAAATATGTAAGAGACTTGATTGAATCTGGTAGGTTCAAAGAAGAGAATTCACAGGCCATAGATATTCCACATTTTCATCTAGAAAGTGTTCTTGATGCTACTAATAACTTTGCAATTGCAAACAAGCTTGGACAAGGGGGGTTTGGTCCTGTTTATAAGGGAAAGTTTCCTGGTGGACAAGAAATAGCTGTAAAGAGACTTTCGAGTTGTTCCGGACAAGGTTTAGAAGAGTTCAAAAATGAAGTTGTGTTGATTGCCAAACTTCAACATCGGAACCTTGTTAGGCTACTTGGTTATTGTCTTGAGGGAGATGAAAAGATGTTAATATATGAATACATGCCTAATAGAAGCTTAGATGGTTTCATATTTGACCGGAAGCTATGTGTTCTATTAGACTGGGATATGCGCTTCAAGATTATTTTGGGGATCGCCCGAGGACTCCTTTATCTTCACGAAGATTCAAGGTTACGGATCATTCACAGAGACTTGAAAACAAGCAATATTCTATTGGACGAAGAGAAGAATCCGAAAATTTCAGATTTCGGCTTGGCTAGAATATTTGGAGGGAAAGAAACAGTAGCAAACACAGACAGAGTAGTTGGAACTTATGGATATATGTCACCAGAATATGCACTTGACGGACATTTTTCCGTCAAGTCCGATGTCTTTAGCTTCGGCGTGGTTGTTCTTGAGATCATCAGTGGGAAAAGAAACACTGGATTTTATCAAGCAGAACATGAATTGAGTCTTCTAGGATTTGCATGGCATTTATGGAAAGTGGGAAGGGCATTGGACTTCATGGACCAGACACTATGTGAAACATGCAATGCTGATGAGTGCTTGAAGTGTGTGAATGTTGGGCTGCTATGCCTACAAGAAGATCCAAATGAAAGACCAAACATGTCAAATGTGGTCTTCATGCTTGGCAGTGAATCCAACACTCTTCCAAGTCCTAAGGAACCAGCATTTGTAATGAGGAGATGCCCTTCTAGCAGAGCCTCTACTTCTAGTAAATTGGAAACTTTTTCAAGGAATGATTTGACTGTTACCTTAGAAAATGGAAGGTAG 3135 0.4204 MVDTKRFCSNRMLFFFLLCSFFCTCMHCYGRDTITINNFLLDGGGGGGDTLVSDGENFELGFFTPNGSSSGRRRYIGIWYYNLSPRTVVWVANRDTPLEDSGGAFGISEDGNLRVLDRNGRPFWGTSLETSSNSSLHRTLKLMDNGNLIVIDEQDEEETKKTKILWESFANPTDTFLPGMKMYQGXSLTSWXSNVDPSPGNYSFQRDQEDSNNNNDQYMIWKRSXRYWKSSVTGKVVGTGEMSLAISYFLSNFTEKISQNYNNTVPFLTSSLYSNTRLVITYWGQLLYLKMDSEKTWSNVWVEPRDRCSVFNACGNFGSCNSKYHAMCKCLPGFRPSSLETWDAGDFSRGCSRKTNVCGEDAKSDTFLRLKMMKVGNPDAQFKAKSEEECKAECLNNCQCYAYSYEDDQTGGSEGGSSRSSGDAVCWIWSEDLNNLEEDYENGCDLNVRVALSDIESTGKSCGTCGTNLIAYPLSRGANCGDPMYLSFHCNDSTGQLDFETPGGAFRVISIDQDKRKFVIHIEDVENCEXQTSRDNKKLLLLNDSSPFHLTGTCYADPRTFTSAAPMKHGVELELSWDPPSEPLCSTLLDCMDWPNSSCNTTSDSNKRCLCNSNYFWDGMKLNCTNGNQSYQADRNLSLTQIMEITFTIVIAIILLSSTVIYIYLKKRRHANSQEIRGYTQKNPGLSSEKYVRDLIESGRFKEENSQAIDIPHFHLESVLDATNNFAIANKLGQGGFGPVYKGKFPGGQEIAVKRLSSCSGQGLEEFKNEVVLIAKLQHRNLVRLLGYCLEGDEKMLIYEYMPNRSLDGFIFDRKLCVLLDWDMRFKIILGIARGLLYLHEDSRLRIIHRDLKTSNILLDEEKNPKISDFGLARIFGGKETVANTDRVVGTYGYMSPEYALDGHFSVKSDVFSFGVVVLEIISGKRNTGFYQAEHELSLLGFAWHLWKVGRALDFMDQTLCETCNADECLKCVNVGLLCLQEDPNERPNMSNVVFMLGSESNTLPSPKEPAFVMRRCPSSRASTSSKLETFSRNDLTVTLENGR* 1045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1920 1044 Pfam D-mannose binding lectin 87 183 IPR001480 -
Amo13g1920 1044 Gene3D - 31 171 IPR036426 -
Amo13g1920 1044 SMART ntp_6 362 450 IPR003609 -
Amo13g1920 1044 CDD STKc_IRAK 732 997 - -
Amo13g1920 1044 Pfam S-locus glycoprotein domain 238 337 IPR000858 GO:0048544
Amo13g1920 1044 SMART serkin_6 726 996 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g1920 1044 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 27 1040 - -
Amo13g1920 1044 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 27 1040 - -
Amo13g1920 1044 ProSiteProfiles EGF-like domain profile. 304 340 IPR000742 -
Amo13g1920 1044 CDD B_lectin 50 172 IPR001480 -
Amo13g1920 1044 Gene3D Phosphorylase Kinase; domain 1 689 801 - -
Amo13g1920 1044 SUPERFAMILY Protein kinase-like (PK-like) 707 997 IPR011009 -
Amo13g1920 1044 ProSitePatterns Serine/Threonine protein kinases active-site signature. 847 859 IPR008271 GO:0004672|GO:0006468
Amo13g1920 1044 Gene3D Transferase(Phosphotransferase) domain 1 802 1008 - -
Amo13g1920 1044 ProSiteProfiles Bulb-type lectin domain profile. 36 163 IPR001480 -
Amo13g1920 1044 SUPERFAMILY alpha-D-mannose-specific plant lectins 88 197 IPR036426 -
Amo13g1920 1044 Pfam Protein tyrosine and serine/threonine kinase 728 995 IPR001245 GO:0004672|GO:0006468
Amo13g1920 1044 CDD PAN_AP_plant 358 451 - -
Amo13g1920 1044 SMART blect_4 42 172 IPR001480 -
Amo13g1920 1044 Pfam PAN-like domain 361 435 IPR003609 -
Amo13g1920 1044 ProSiteProfiles Protein kinase domain profile. 726 1012 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g1920 1044 ProSiteProfiles PAN/Apple domain profile. 358 444 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1920 Amo-Chr13 28900383 28904956 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1920 722 1012 Receptor kinase-like Gene Family AT4G23230 61.168 2.93e-121 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo13g1920 PK_Tyr_Ser-Thr 1.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1920 - - gmx:100775297 1616.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0909 18 13440892 13445377 Amo13g1920 13 28900383 28904956 PCT
Amo08g1136 08 18924459 18926477 Amo13g1920 13 28900383 28904956 PCT
Amo13g1920 13 28900383 28904956 Amo18g0908 18 13425466 13430196 PCT
Amo13g1920 13 28900383 28904956 Amo08g1138 08 18932691 18958910 PCT