Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1900 ATGAGTTTTAGTGAAAACATAATTACACTTGCATTGTATTATTGTCCTTCAGCAGCTTTAGCATATCCACCTAGGAGGGTGGAAGTCTTCCACGCCGGAGACAGAAGCAGCAGGTCCCCGGACTTCCTCCTCGCCTTCAGCAGCTTCTCGGCTTCCTTCGCACAACCTGGTCCCAATTTGGGTGCAATGGATGTTGACTCGGAACCACTCAGTTCACAAGAGAACGTCGAAGATTGCATGATGAATGGTGTGGAAGAAAATGTTAACTGCACTTGTGATTGCGGTGGCAGCAGTAGTAAGTGTGTGTCTGTGACGGCCGATGATATTATAAACCAGACCTTTGAAACATCGGATGCAGCTTATAACTTGTATGTACGTTATGCGAGGTGTCTCGGGTTTGGAGTTCGCAAGGGTGATACAGCACGTGGAAAAGATGGAACACAGCGCAGAAGGAGGTTTTTTTGCAGCAAGGAAGGAAAGAGAGCCGAGAAATACATATCTAGTTTGAGTAGGAAGAGGGAGCATAGAGCGCTGACTCGCACTGGTTGTGAAGCCATGCTTGCGGTGTATCTTGACACTAAAACTTCGACTTGGAGGGTTAAAAAATTAGTTGAGAAGCACAACCACGATCTTGTCCCAAAATGCTTGACGCTGTATGGAGAGCCCGTTCTAACTACTGGGCTAGAAGCATTGGAGCTTTCTGCTGCCAATTTTTACACAAGGGAGATTCTTGGAGAAGTAAAAAAGGAGATTCAAAGAGTGGTCGCATTAGATGTAATAAATGAGGAAAACATATCAACCACTGTTGTGTTAAAAGTTAAGGAGTGTGACAGGAGGCAACATATTTATAACGTACTTTATGATCGCAATACTGAGCATATGGAGTGTGAATGTAGTCGGTGGAGTAGTGAAGGCATTCCTTGCAGCCACATGTTTTGTGCAATGAAAAGGGTAGGTTTACAGAAGTTGCCAGATAGACTTCTTTTGAAAAGATGGTCGAAGGATGCTAAGAAGTATCTGGATGAAAGTTCTGCTGGAGGCACTACGCAAGACAGAGAAAGAGAATTTTTAATGCGCTATGGCGCATTGTCAGTGGCAGCTACGTGGATGGTATTCTTAGGAGCTCAAGATGGTCCTTCTTTCCATGACACTATGAATGAAGTCTGGTGTTGGACCCAAACACTAGAACAAAAATCTGACTTGAAAAGACAAACAAGAGATTCAAATTAA 1230 0.439 MSFSENIITLALYYCPSAALAYPPRRVEVFHAGDRSSRSPDFLLAFSSFSASFAQPGPNLGAMDVDSEPLSSQENVEDCMMNGVEENVNCTCDCGGSSSKCVSVTADDIINQTFETSDAAYNLYVRYARCLGFGVRKGDTARGKDGTQRRRRFFCSKEGKRAEKYISSLSRKREHRALTRTGCEAMLAVYLDTKTSTWRVKKLVEKHNHDLVPKCLTLYGEPVLTTGLEALELSAANFYTREILGEVKKEIQRVVALDVINEENISTTVVLKVKECDRRQHIYNVLYDRNTEHMECECSRWSSEGIPCSHMFCAMKRVGLQKLPDRLLLKRWSKDAKKYLDESSAGGTTQDREREFLMRYGALSVAATWMVFLGAQDGPSFHDTMNEVWCWTQTLEQKSDLKRQTRDSN* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1900 409 Pfam FAR1 DNA-binding domain 123 213 IPR004330 -
Amo13g1900 409 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 231 352 IPR031052 GO:0006355
Amo13g1900 409 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 110 219 IPR031052 GO:0006355
Amo13g1900 409 ProSiteProfiles Zinc finger SWIM-type profile. 283 319 IPR007527 GO:0008270
Amo13g1900 409 SMART 26again6 294 321 IPR006564 GO:0008270
Amo13g1900 409 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 231 352 - -
Amo13g1900 409 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 110 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1900 Amo-Chr13 28457287 28460369 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo13g1900 FAR1 5.8e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1900 - - ahf:112717474 375.555