Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1898 ATGGAGTTGACAAGACCTGGCTATGCCGTAATTTATGTCATTCTACTTTGCGCCTTGGCACAAGGGGGCTCAGAGGGGAAGAGGGGCGAGGACGATGATTTTTCTCCATCATCGTTACTTGTACACACAACACAACAGGCCGAGATAGTGCCAAAACATAGAAAAGAATTGACAAAGAACATTGAAGCCAAAGAGTTGGACTTACATGCAAAAGAAGAGAGCAATGACATTAGGCCAATACTTTTCAGAGAAAACAACACACACAAAGCAACCAAATCAAACCAAACTATTGATCCACCAACACCACAACCACAGTCACCGCCACCGCGACGATCTCATCGACTCGTTGCCGCTTCTAGATCTCTAACAGAGAGTAGTGATCCTGTAACTTCTCCTCCACCTAATAAAAATGAAGATGACAAACAACCAAAAACGACGGTTCATGGTGCTGCTGCTGTATCAGGAATTCTAATGGCACTTGGGGTGTCCTTTTGCTATAGACAGGTCAAAACCAACAAAGAGGAAAAAGAAGATATACTAATATTAACCTCAAAGGATTATGCTGGCGGTTCACCAAAGATTGTTCGTTTGGGAGATAATACTGAACTTAACAAGCATAATAAGGAAGAAGAATCTGGTACAGATAACAATGAAAAGAAAACTTCTGATGATGATGCTATAAGTGGCTCAATTGATAATAAGAATGAAGGTAGCAACGCTACCTCAGAAGTTGAGACAACAGCACCATTACAAGTTGTGGAACATGTAGTTGAATTTGCACCAGGCCCACCACAACCACCACCACCGCCACCAACTCGATCAGCTCCACTACCTCCCCCGGCCCCACGGCCCCCTCCACCGCCGGTCCCCCCACGGGGCAACGGTCCGCCACCACCACCGCCTCCAAGGCTACCCGGTCTGGGCCCTCGGGCGCCACCGCCGCCGCCTTTAAGAGGAGGGCGAGGAACAAGTCATCCTCCACCTGTTCCTTCAAGACCATTGTCTAAAAGATTTAGAAATGTTGCTAGAGTAGATAGCTTTACTGAGGCCCCTGATCCTGCAAAGCCTAAACTAAAGCCATTTTTCTGGGACAAGGTTAATGCAAAATCTGATCAAGCAATGGTGTGGCACGAAATCAGCGGAGGTTCATTCGTATTCAATGAGGAACAGATGGAGTTTTTATTTGGTTGCACAAACCATAACAAAAATGAACGCAAAAAGGATTCACCACAAATTGATTCAGCACAGCTTGTTCAGATTATTGACAAGAAAAAAGCACAGAATTTGTCAATTCTTTTGAAAGCTTTGAATGTGACAACAGAGGAAGTTGTTGATGCCATTAAAGAAGGTAATGAGCTTCCTATTGAGCTCATGCAGACACTGGTGAAGATGGCTCCGACATCCGACGAAGAATTGAAGCTTAGGTTATATACAGGACCCCTTTCTGATCTTGGCCCTGCAGAGAAGTTTCTCAAAGTCTTGGTAGATATTCCATTTGCTTTCAGACGCATTGAATGTTTGATTTTCATGTGTACCCTTCAAGAAGAGTCCTCAACTATGAGGGAGTATTTCACAACATTAGAGGTTGCTTGCAAGAAACTTGTAAAAAGTAGGCTATTCTTGAAGCTTCTAGAAGCAGTTCTTAAAACCGGCAACCGAATGAACGACGGAACATACCGCGGCGGCGCGCAAGCATTCAAGCTGGACACACTCTTGAAGCTATCAGACGTGAAAGGAACAGATGGGAAGACGACGCTGCTGCACTTCGTTGTTCAAGAAATCATTCGATCCGAGGGAGTTAGAGCTCTAAGAACGGCGAAAGAAAGCGGAAGCATGCCAAACTTGGAAACAGAGGATTCTTCTGAAGAAAACTACCGAAGCCTCGGCATTGAAGTAGTTTCAGGCCTAAGCGCTGAGCTATTGGACGTGAGAATGGCGGCGTTAATAGACGGCGATTTGATCAGTTCTACGGTGGCGAAACTCAGCCACTCGCTTTCCAAGACTCGAGAGTTTCTTGACACCGAGATGAAGAACGTTCAAGAAGACGGCGAGTTCCGATCTTGCATGGAGGGATTTCTGGAGAAGGCGACATCGGAAGTGGCTTGGTTGATTGAGGAGGAGAAGAGGATAACGGAACTTGTTAAGGGAACTGCAGATTATTTTCACGGTAATTCAGGGAAAGAAGAAGGGCTTAGATTGTTCGCCGTTGTCCGCGATTTCTTGTTCATATTGGATAAGGTGTGCAAGGAGGTGAAGGAAACAAACATTAAAGAGGCAAAGATTAATGCTGCTTCAAAGAATTATAATAATAACAATAATAATCATAATGATAATAACAATAATAATAGTAATGTTAAAGAGTCTTCACCGTCAGTGACGCCGTCTTCTACCACGGAAGCTCAACAGCAAAATTCAGGGCCTTCTGAACTTCATAGGAGATTGTTTCCTGCTATTGTCCAGAGGAGAGTGGATGATGATTCTAGCTCTGATGATGACTACGACGATGACGACGATAATAACAAAATTTCTCCATAA 2535 0.4438 MELTRPGYAVIYVILLCALAQGGSEGKRGEDDDFSPSSLLVHTTQQAEIVPKHRKELTKNIEAKELDLHAKEESNDIRPILFRENNTHKATKSNQTIDPPTPQPQSPPPRRSHRLVAASRSLTESSDPVTSPPPNKNEDDKQPKTTVHGAAAVSGILMALGVSFCYRQVKTNKEEKEDILILTSKDYAGGSPKIVRLGDNTELNKHNKEEESGTDNNEKKTSDDDAISGSIDNKNEGSNATSEVETTAPLQVVEHVVEFAPGPPQPPPPPPTRSAPLPPPAPRPPPPPVPPRGNGPPPPPPPRLPGLGPRAPPPPPLRGGRGTSHPPPVPSRPLSKRFRNVARVDSFTEAPDPAKPKLKPFFWDKVNAKSDQAMVWHEISGGSFVFNEEQMEFLFGCTNHNKNERKKDSPQIDSAQLVQIIDKKKAQNLSILLKALNVTTEEVVDAIKEGNELPIELMQTLVKMAPTSDEELKLRLYTGPLSDLGPAEKFLKVLVDIPFAFRRIECLIFMCTLQEESSTMREYFTTLEVACKKLVKSRLFLKLLEAVLKTGNRMNDGTYRGGAQAFKLDTLLKLSDVKGTDGKTTLLHFVVQEIIRSEGVRALRTAKESGSMPNLETEDSSEENYRSLGIEVVSGLSAELLDVRMAALIDGDLISSTVAKLSHSLSKTREFLDTEMKNVQEDGEFRSCMEGFLEKATSEVAWLIEEEKRITELVKGTADYFHGNSGKEEGLRLFAVVRDFLFILDKVCKEVKETNIKEAKINAASKNYNNNNNNHNDNNNNNSNVKESSPSVTPSSTTEAQQQNSGPSELHRRLFPAIVQRRVDDDSSSDDDYDDDDDNNKISP* 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1898 844 SMART it6_source 348 759 IPR015425 -
Amo13g1898 844 MobiDBLite consensus disorder prediction 84 147 - -
Amo13g1898 844 MobiDBLite consensus disorder prediction 231 248 - -
Amo13g1898 844 SUPERFAMILY Formin homology 2 domain (FH2 domain) 297 760 - -
Amo13g1898 844 MobiDBLite consensus disorder prediction 118 136 - -
Amo13g1898 844 Gene3D Formin, FH2 domain 354 784 IPR042201 -
Amo13g1898 844 MobiDBLite consensus disorder prediction 189 337 - -
Amo13g1898 844 MobiDBLite consensus disorder prediction 199 230 - -
Amo13g1898 844 Pfam Formin Homology 2 Domain 351 742 IPR015425 -
Amo13g1898 844 MobiDBLite consensus disorder prediction 260 333 - -
Amo13g1898 844 MobiDBLite consensus disorder prediction 766 809 - -
Amo13g1898 844 PANTHER FORMIN-LIKE PROTEIN 1 86 - -
Amo13g1898 844 PANTHER FORMIN-LIKE PROTEIN 99 289 - -
Amo13g1898 844 PANTHER FORMIN-LIKE PROTEIN 285 834 - -
Amo13g1898 844 Coils Coil 54 74 - -
Amo13g1898 844 ProSiteProfiles Formin homology-2 (FH2) domain profile. 348 770 IPR015425 -
Amo13g1898 844 MobiDBLite consensus disorder prediction 766 844 - -
Amo13g1898 844 MobiDBLite consensus disorder prediction 24 44 - -
Amo13g1898 844 PANTHER FORMIN-RELATED 285 834 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Amo13g1898 844 PANTHER FORMIN-RELATED 99 289 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Amo13g1898 844 PANTHER FORMIN-RELATED 1 86 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1898 Amo-Chr13 28448923 28454005 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1898 352 824 FH2 protein (formin) Gene Family AT5G54650 56.936 2.55e-176 530
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1898 - - ahf:112737572 969.148