Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1883 ATGTGCAAAGGTGCAGAAGAAAAAAAGCATGGTGGTGGTTTTTGTAGGAGCTTCACACATGAAGAGGGTGCATCATCACAACATCATCATCATCATGATGGTGGTTCAAAATCTTGTGAGCTATGTGGATTTCAAGCTTCATTGTATTGCCAAGCTGATGATGCTTATTTGTGTAGAGAGTGTGACAAATGGGTTCATAAGGCAAATTTCTTGGCGCTTAGACACATAAGGTGTTTTTTGTGCAACACGTGTCACAATCTTACAAGGAGATGTCTCATTGGAGCTTCTATGGAGGTCATTCTTCCAGCGACATTAATTGAGAACCTTTCTAACAACAACAATAGCAGGGATTGTTCAACAACACAAGACACCCCTTTCAAGTTTCTCTAA 390 0.4026 MCKGAEEKKHGGGFCRSFTHEEGASSQHHHHHDGGSKSCELCGFQASLYCQADDAYLCRECDKWVHKANFLALRHIRCFLCNTCHNLTRRCLIGASMEVILPATLIENLSNNNNSRDCSTTQDTPFKFL* 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1883 129 CDD Bbox1_BBX-like 39 80 - -
Amo13g1883 129 SMART bboxneu5 34 80 IPR000315 GO:0008270
Amo13g1883 129 PANTHER B-BOX ZINC FINGER PROTEIN 29 36 120 - -
Amo13g1883 129 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 36 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1883 Amo-Chr13 27947990 27948697 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1883 1 129 C2C2-CO-like Transcription Factor Family AT3G21890 41.007 1.01e-28 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Amo13g1883 zf-B_box 1.7e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1883 - - gmx:100305571 154.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g1883 13 27947990 27948697 Amo13g1883 13 27947990 27948697 ECH
Amo08g1165 08 19320381 19321375 Amo13g1883 13 27947990 27948697 PCT
Amo13g1883 13 27947990 27948697 Amo08g1165 08 19320381 19321375 PCT