Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1879 ATGGTTGAACGAAAGCAATTCAAGACAAGGTTATGTGTTCCTTATCAGAGAGGACGCTGCACGCGTCATAATTGCAACTTTGCGCATGGTAATGCTGAGTTGCGAAGGTTCTCTGCCACTTATAATGGTAGGAAAGACTTAGCCAATGACTTGAGGGATACACTAGACAGAAGGTATTTATCACCTCGAAGACACTCACCAACTCGAGATGGTAGAGGACACCAGGCCATTCATGAACACAGTCCGTCAAGATCCATGGAGAAAAAAAGTGACAGAAGACATTGGAGAAAACAGGGCATTACTGGCCAAAGTGATATTTCTGCAAGCTTGAAAGTCTCAGATAGAATTCAAGATCCGGTTAAAGAAGGAAAATTCGTTTCTTCTTGTTCTAGAAATACACTTGAGGAGCAGTTAAAGAAAGTACAATTGGACATCAGGACTTTTGAGGACCGAAAATTCCAACTATCGGTTTACCTGGATGAGAGTGCTCAAGAAGTGGATAGCCTTAATTCTAGAATTCAGGAACTTGAAGCTCAGTTAGTTAAAGAGAATGAGGAGTGTAAAAGAATCAATTCTGGAATAAGGAAGTTTATCAGAGTGTACAATCATAATTCGCAGCTACAAGAAGAACTGAAGAGATCACAAGTCCGACTTCAAAAGCTTGGTGATCAGCTTGTCTCGGATATTGCTAGAATTGGTGCTGAGGAAGAAGATCTAAGCATTGATATTGTAAGCAATGGTGAGAATAATAGTCATCCTCCAATCCCCAAACATAATGCCGAACAGAATGATGCATCTCCCCATGGAAAAAAGCTGCATGTGCATGCTGAGCAGGATGTATTGGAAGAGTTAAAACAAGATAGATCAAAAGTTGGGAATTCGGTTGAAACAAGAAGAAACAGGAAGCGATCTCGTTGGAATTTGCCTGCTCAATTGAATGACAAGGATAATGTAGGCCTTGAAACTCCAAACGATGGAACTGAAGATGCTAGGCCTTTAGATATTGAAAGCAAGCAGAAGAGAGGAAAGCTGAATTCTTCTGACAACCTTTCTTCAGAAAAGTTGAAGGAATTTAGGAATGAAGTGCCGTCAACAAGCATGGCAGCTCATGTGTTTGACGAGGAAGTTGAGATTGTATTTGATGACAGAATTGACCTCAACGAAATTGCACATACAGAAAATGACAATGAAGTGGCATTAGAGGTGAAGGGCGTACCCCTAATGCTTCCCCCAGCATTGATTCCCCATACCAATTATTCGCAGTACGAGGGGGACGACGAGAATGTGGACGTGGATGGTCTTGATGAAGGGGGAAATGTGGATATTGTCTGA 1332 0.4159 MVERKQFKTRLCVPYQRGRCTRHNCNFAHGNAELRRFSATYNGRKDLANDLRDTLDRRYLSPRRHSPTRDGRGHQAIHEHSPSRSMEKKSDRRHWRKQGITGQSDISASLKVSDRIQDPVKEGKFVSSCSRNTLEEQLKKVQLDIRTFEDRKFQLSVYLDESAQEVDSLNSRIQELEAQLVKENEECKRINSGIRKFIRVYNHNSQLQEELKRSQVRLQKLGDQLVSDIARIGAEEEDLSIDIVSNGENNSHPPIPKHNAEQNDASPHGKKLHVHAEQDVLEELKQDRSKVGNSVETRRNRKRSRWNLPAQLNDKDNVGLETPNDGTEDARPLDIESKQKRGKLNSSDNLSSEKLKEFRNEVPSTSMAAHVFDEEVEIVFDDRIDLNEIAHTENDNEVALEVKGVPLMLPPALIPHTNYSQYEGDDENVDVDGLDEGGNVDIV* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1879 443 MobiDBLite consensus disorder prediction 58 100 - -
Amo13g1879 443 MobiDBLite consensus disorder prediction 244 269 - -
Amo13g1879 443 MobiDBLite consensus disorder prediction 283 357 - -
Amo13g1879 443 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 40 1 436 IPR045868 GO:0046872
Amo13g1879 443 ProSiteProfiles Zinc finger C3H1-type profile. 6 32 IPR000571 GO:0046872
Amo13g1879 443 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 40 1 436 - -
Amo13g1879 443 Coils Coil 131 151 - -
Amo13g1879 443 Coils Coil 204 224 - -
Amo13g1879 443 Gene3D - 1 36 - -
Amo13g1879 443 MobiDBLite consensus disorder prediction 327 343 - -
Amo13g1879 443 Coils Coil 159 193 - -
Amo13g1879 443 MobiDBLite consensus disorder prediction 283 303 - -
Amo13g1879 443 MobiDBLite consensus disorder prediction 58 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1879 Amo-Chr13 27874542 27882097 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Amo13g1879 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1879 - - adu:107477805 823.928
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g1879 13 27874542 27882097 Amo13g1879 13 27874542 27882097 ECH