Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1873 ATGGGTGACGCGGATCGATCCTCCTCTCATGATGTTTCTCCAGATTCTACAGAGCAAATCAATCAAGCTTCCAAGATTAAATTTTCTGAAGAAGAAGAAATCCTTATTGGCATGGTGTATAATCTGGTTGGTGAGAGGTGGTCTTTGATTGCTGGAAGAATTCCTGGAAGAACAGCAGAGGAAATAGAAAAGTATTGGACTTCAAGATACTCATCAACCAGCGAATAA 228 0.4035 MGDADRSSSHDVSPDSTEQINQASKIKFSEEEEILIGMVYNLVGERWSLIAGRIPGRTAEEIEKYWTSRYSSTSE* 76
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1873 75 MobiDBLite consensus disorder prediction 1 24 - -
Amo13g1873 75 Gene3D - 27 69 - -
Amo13g1873 75 SMART sant 24 72 IPR001005 -
Amo13g1873 75 PANTHER TRANSCRIPTION FACTOR TRY-LIKE 12 73 - -
Amo13g1873 75 SUPERFAMILY Homeodomain-like 27 70 IPR009057 -
Amo13g1873 75 CDD SANT 30 66 IPR001005 -
Amo13g1873 75 ProSiteProfiles Myb-like domain profile. 30 70 IPR001005 -
Amo13g1873 75 Pfam Myb-like DNA-binding domain 27 67 IPR001005 -
Amo13g1873 75 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 12 73 - -
Amo13g1873 75 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 27 74 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1873 Amo-Chr13 27765842 27770766 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1873 28 71 MYB Transcription Factor Family AT5G14750 50.000 4.71e-12 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Amo13g1873 Myb_DNA-binding 2.5e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1873 - - rcu:8264277 110.538