Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1844 ATGTTGAGAGAGTATGTGATGAAGTACGGTGAAGGGAATTGGAACTGTGTGCAAAAGAATTCAGGGTTGGCAAGGTGTGGCAAAAGTTGTAGGCTTAGATGGGCCAATCATCTAAGACCTAATTTGAAGAAAGGTTCATTTTCTAAAGAAGAAGAAGATTTAATTGTTCAACTTCATGCTAAGCTTGGAAACAAATGGGCTCGAATGGCCGCACAGCTACCTGGGAGAACAGATAATGAAATAAAAAACTTTTGGAACACTAGAGTAAAAAGATGCCAAAGAGCTGGGTTGCCACTTTATCCACCACAAGTGTTGCATGAAGCCAATCTAATAGCCCACCCTTCTACAAATCAACAAAACCCACCCCATTCCTCTTGTTTATCAAATAATAATCCACAACCATACCCACAATTCAAGTTTCCAAATGAAAACCCTAATATTACAAATAGTGGAAATTTAGGGTTCCCATTATCTCCTATTTCCATAACTTCCTCTTTGTTTCACCAAAGCTATAATAATGTAAATAATAGCTCAAATAATGATTACCATTTAGGAAGCTATAACTATGGCCAATCATCACCACCACTTAGCTCAACAACACCTACTTCATCTCATGCTAGCGGTAATAATGGCTACTTAATAGGAGGAGGAGCTTCAAACATGGCTACAAATGGTGACGGCGGCCGCTCCGGAGTTGCGCCACTTTCGCCGCCTCAAGAAAATGGTGGTGGTGGCTTGTTGGGTGCAGTTTTGGTAGAAGCTCAAAGTCTTTGTAACAATAATGACAAGTCTAAGAGTGATAATGAGGATTCAACTGCATCACAGGTTTTATCTCATAAAAGAAAATACATAGTAACTACTGAGGAATGTGCAAAAGAAGAAGAGACTAATAATGTGGTTGTGGAGTCAGATACCAAAAGCAATGGAAATACCATTAATAAAATACACAAGGTTGATTTGTACTCTTCTCCATTTTCAACAGGGAATAAACAAACAACTGAGGATGAATTGGAGGAAATCAATACCATGGATGATGACTTATTTGGCCTACTTAAAAACTTTCAAGAAATGCCAGTTCCAGATTGGTACCACAAAAGAGGACAACCATTGGAACTTGAAACTCAACAAGATGCTTCATTGGGCCCCATAGATCAAGCATTTTCAGCTCATGACAGTTTTTGGAGAAACATGCCCAAATATTGA 1203 0.3882 MLREYVMKYGEGNWNCVQKNSGLARCGKSCRLRWANHLRPNLKKGSFSKEEEDLIVQLHAKLGNKWARMAAQLPGRTDNEIKNFWNTRVKRCQRAGLPLYPPQVLHEANLIAHPSTNQQNPPHSSCLSNNNPQPYPQFKFPNENPNITNSGNLGFPLSPISITSSLFHQSYNNVNNSSNNDYHLGSYNYGQSSPPLSSTTPTSSHASGNNGYLIGGGASNMATNGDGGRSGVAPLSPPQENGGGGLLGAVLVEAQSLCNNNDKSKSDNEDSTASQVLSHKRKYIVTTEECAKEEETNNVVVESDTKSNGNTINKIHKVDLYSSPFSTGNKQTTEDELEEINTMDDDLFGLLKNFQEMPVPDWYHKRGQPLELETQQDASLGPIDQAFSAHDSFWRNMPKY* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1844 400 SMART sant 43 91 IPR001005 -
Amo13g1844 400 SMART sant 1 40 IPR001005 -
Amo13g1844 400 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 39 93 IPR017930 -
Amo13g1844 400 SUPERFAMILY Homeodomain-like 1 85 IPR009057 -
Amo13g1844 400 Gene3D - 46 92 - -
Amo13g1844 400 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 1 372 - -
Amo13g1844 400 MobiDBLite consensus disorder prediction 185 217 - -
Amo13g1844 400 CDD SANT 1 38 IPR001005 -
Amo13g1844 400 MobiDBLite consensus disorder prediction 185 246 - -
Amo13g1844 400 MobiDBLite consensus disorder prediction 114 150 - -
Amo13g1844 400 ProSiteProfiles Myb-like domain profile. 39 89 IPR001005 -
Amo13g1844 400 Pfam Myb-like DNA-binding domain 44 87 IPR001005 -
Amo13g1844 400 Pfam Myb-like DNA-binding domain 2 38 IPR001005 -
Amo13g1844 400 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 38 IPR017930 -
Amo13g1844 400 CDD SANT 46 87 IPR001005 -
Amo13g1844 400 Gene3D - 1 43 - -
Amo13g1844 400 ProSiteProfiles Myb-like domain profile. 1 38 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1844 Amo-Chr13 27193600 27195964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1844 1 108 MYB Transcription Factor Family AT2G32460 78.704 9.34e-58 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo13g1844 Myb_DNA-binding 7.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1844 K09422 - gmx:100798860 312.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g1844 13 27193600 27195964 Amo13g1844 13 27193600 27195964 ECH