Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Amo13g1841 | ATGGGGGCTATAAAATCAGCCATGGGAGATGCAATCTTAACATCAGTATGGGTCTTCAGCCTCTCATCACAAAGGATTATCTCATCAGAGATATCTTCATTTCTTGGATTCAAACCATTCACACTTCCATCACTATTCCTCTCAACAATCATAAACTCCATCATAGTCTTCACCATAACCTCCATTGGAAGGRTCTTAGGTGGTGCAAGCTTCAACCCTTCATCCACAGTTTCATCCTACTTCTTAGGCCTAAGGCCAGATTCATCACTCTCATCATTGGCCATAAGGTTCCCTGCTCAAGCACTTGGTGGGGCRCTTGGTGCAAAAGGGTTACTTTCTGTGGTGCCRCCACAGTATAAGATTTTGCTGAAAGGTCCTTACTTGAAGGTGGATTTACACACTGGTGCTTTTGCTGAAGGAGCATTGGTTTTTGCACTTAACTTGGCTATACTTATTATTGTTATGAAGGGTCCTAAGAATCCTTTCTTGAAGGTTTATATGATTTCTTTGACAACTTTGACTTTGGCTATTTGTGGTTCTGGTTACACTGGACCTTCTATGAACCCTGCAAATGCATTTGGTTGGGCTTATATGTATAATAGGCATATGAATTGGGAGCTGTTTTATGTCTATTGGATTTGTCCTTTTATTGGGGCATTTTTTGCTGCTTTGGTTTATAAGGCTCTCTTTATGTCACCACCAGAGATGATGAAGAAGAAGAAGCAGAAGCAGAAGAAAGCTTGA | 744 | 0.4073 | MGAIKSAMGDAILTSVWVFSLSSQRIISSEISSFLGFKPFTLPSLFLSTIINSIIVFTITSIGRXLGGASFNPSSTVSSYFLGLRPDSSLSSLAIRFPAQALGGALGAKGLLSVVPPQYKILLKGPYLKVDLHTGAFAEGALVFALNLAILIIVMKGPKNPFLKVYMISLTTLTLAICGSGYTGPSMNPANAFGWAYMYNRHMNWELFYVYWICPFIGAFFAALVYKALFMSPPEMMKKKKQKQKKA* | 248 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Amo13g1841 | 247 | SUPERFAMILY | Aquaporin-like | 5 | 243 | IPR023271 | - | |
| Amo13g1841 | 247 | Pfam | Major intrinsic protein | 49 | 226 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
| Amo13g1841 | 247 | PRINTS | Major intrinsic protein family signature | 92 | 111 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
| Amo13g1841 | 247 | PRINTS | Major intrinsic protein family signature | 169 | 191 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
| Amo13g1841 | 247 | PRINTS | Major intrinsic protein family signature | 209 | 229 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
| Amo13g1841 | 247 | PRINTS | Major intrinsic protein family signature | 52 | 76 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
| Amo13g1841 | 247 | PANTHER | MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER | 1 | 241 | - | - | |
| Amo13g1841 | 247 | Gene3D | Glycerol uptake facilitator protein. | 2 | 244 | IPR023271 | - | |
| Amo13g1841 | 247 | PANTHER | AQUAPORIN SIP1-1 | 1 | 241 | IPR044222 | GO:0015250 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Amo13g1841 | Amo-Chr13 | 27130339 | 27131732 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Amo13g1841 | 1 | 242 | Major Intrinsic Protein MIP | AT5G18290 | 40.741 | 3.01e-55 | 176 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Amo13g1841 | K09875 | - | gmx:100775829 | 305.449 |