Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1836 ATGAGGAAAGAGAATATTAGAGACATTTTCAATGATTCTGTATTTAAAGGGAAGGGGAAGCAACCGAGGGATACCACTGAAGGAGTTGAAACTAACGATATGGATGGAGATGCTTATGCAATATCTTCGGATTCCAAGTATGAAGATGCATTAGATGGGAACAGTGTTTTCGACTTGAATCAAGACCCAACTTTAAGCATTAGTGTTTCTGATATAATGGTTGATTACACTTCTGATTCATCTGATGGTAGCAACCATTTATACAAAAGGGGAAAGGCACAGTCCAAAAAGAAAAGAAAGACACACAACTTGAGAAATGAAGAACTGATTGATGTAGAGATTCAGCCAGCAGCTGTTGTCAATTTGGTTAATAACCGAAAGAAGAAAAAAACAAGGAAAAGCAAAAAGGGAGCATCTGACATAGTATTACTATGGCATGCTTGGGAAGAGGAGCAAGAAAGGTGGATCGATGAGAATTTATCAGCAGATGCTGACTTAGATCATCAAAATGAAGAAATGAATGAAACTGCTGAGCCATCCTCAGATCTGACTATGCCTTTGTTGAGGTACCAGAAGGAATGGTTAGCATGGGCTTTGAAGCAGGAAAGTTCTGTGTCAAGAGGAGGAATTCTTGCAGATGAGATGGGGATGGGGAAGACTATTCAAGCAATTACCCTAGTACTTGCTAAACGTGAATTCCAGCACATGATTTGTGAGCAAGATGAACCTGCACCTGTGGCAGGTTCATCAAGAGTCTTACCTGCTATCAAAGGAACACTTGTTATTTGTCCTGTGGTTGCTGTCACTCAGTGGGTTAATGAGATTGATCGATTTACTTTGAAAGGAAGCACCAAGGTGCTGGTTTATCATGGGGCAAGGAGAGGAAAGAATGTTGAACAGTTATCTGAATATGATTTTGTAATAACAACCTACTCTATCGTGGAGTCTGAGTACAGAAAATATATGATGCCTCCTAAGGAAAAGTGCCAATATTGCGGAAAATTATTTTACCTGAATAAGTTACCTTATCACCTGAGGTATTTTTGTGGACCTGATGCTGTGAGAACAGAAAAACAGTCAAAACAAATGAAGAAAAAGAAAAAGTTTGCTACAAAACAGAAGATAAAAGATCATGAGTATTGGAATGAAGAATTGGAACAGGATGGTTTTGACAAGAAAAAGAAAGAGAAAATGGGCTTGGGAATGGATGATTTAGATGCCACTGACAGGGAGAAATCATTTCTTCATGCTGTAAAATGGCAGCGGATCATATTGGATGAAGCACACTACATAAAGTCGAGACACTGTAACACTGCAAAAGCTGTTCTTGCCTTAGACTCTTCATACAGATGGGCGCTTAGTGGCACTCCCCTGCAGAACCGTGTTGGAGAGCTGTATTCTCTGGTTCGGTTTCTGCAAATAGTTCCTTATTCCTATTATTTCTGCAAGGACTGTGATTGCCGGGCTCTTGATCACAGCTCCTCTAAACAATGTTCAGCCTGTGGTCACAGTTCTGTTAGACATTTTTGTTGGTGGAACAAATATGTTGCCACACCAATTCAATCGTATGGATATGGTGATTATGGAAGAAGAGCTATGATACTGCTTAAGAACAAAATTTTAAAGAACATAGTTCTAAGGCGAACTAAAACAGGCAGGGCTGCTGATCTTGCACTACCACCTAGAATTGTTTCATTGAGGAAGGATAGCCTGGATATAAAAGAGCAAGACTATTATGAATCGTTATACAATGAAAGTCAGGCACAGTTTAATACATATGTTGAGGAAAATACTTTGATGAATAATTATGCTCATATATTTGACCTCCTCACACGGCTTCGTCAGGCTGTTGATCATCCATATCTTGTGGTATATTCTCAAACTACTGCAATAAGAGAAAGTAACTTGCCTAGTAATGGTAATGTTGAACAAGCTTGTGGCCTGTGTCATGAGCCAGTAGAAGATCCTGTTGTTACCTCTTGTGAGCATATCTTTTGCAAGGCATGCTTGATAGACTTTTCTGCTTCCTTAGGACAAGTATCATGCCCCACATGCTCTAAGTTACTTACTGTTGATTTAACTTCAAACAAGGATGTTGGGGTTCAGGTTAATAAGACAACCATTAAAGGTTTCAGATCCTCCAGCATTCTAAACAGAATTCGGCTTGAGAACTTTCAGACAAGCACTAAAATTGAGGCACTGAGAGAAGAAATCAGATTTATGGTTGAAAGGGATGGATCTGCAAAAGGGATTGTTTTTAGTCAATTCACGTCATTCCTGGATCTCATAAATTACTCCCTGCACAAGTCAGGTGTATCTTGTGTTCAATTGAATGGAAGCATGTCATTGGCTGCTCGGGATGCTGCCATTAAGAGATTTACTGATGATCCAGGCTGCAAAATTTTCCTCATGAGCTTGAAGGCTGGTGGTGTTGCTCTCAATTTAACAGTTGCATCACATGTTTTCTTGATGGACCCTTGGTGGAACCCTGCTGTGGAGCGTCAGGCTCAAGACAGGATTCACAGAATAGGGCAATATAAGCCAATCAGAATCGTCAGATTTGTCATTGAAAACACAATTGAGGAGAGGATTTTAAAACTGCAAGAGAAAAAGGAACTAGTATTTGAAGGGACTATTGGCGGCTCCTCCGAGGCGCTAGGGAAATTGACGGAGGCTGACTTGAAATTCCTCTTTGTTACCTAA 2703 0.4003 MRKENIRDIFNDSVFKGKGKQPRDTTEGVETNDMDGDAYAISSDSKYEDALDGNSVFDLNQDPTLSISVSDIMVDYTSDSSDGSNHLYKRGKAQSKKKRKTHNLRNEELIDVEIQPAAVVNLVNNRKKKKTRKSKKGASDIVLLWHAWEEEQERWIDENLSADADLDHQNEEMNETAEPSSDLTMPLLRYQKEWLAWALKQESSVSRGGILADEMGMGKTIQAITLVLAKREFQHMICEQDEPAPVAGSSRVLPAIKGTLVICPVVAVTQWVNEIDRFTLKGSTKVLVYHGARRGKNVEQLSEYDFVITTYSIVESEYRKYMMPPKEKCQYCGKLFYLNKLPYHLRYFCGPDAVRTEKQSKQMKKKKKFATKQKIKDHEYWNEELEQDGFDKKKKEKMGLGMDDLDATDREKSFLHAVKWQRIILDEAHYIKSRHCNTAKAVLALDSSYRWALSGTPLQNRVGELYSLVRFLQIVPYSYYFCKDCDCRALDHSSSKQCSACGHSSVRHFCWWNKYVATPIQSYGYGDYGRRAMILLKNKILKNIVLRRTKTGRAADLALPPRIVSLRKDSLDIKEQDYYESLYNESQAQFNTYVEENTLMNNYAHIFDLLTRLRQAVDHPYLVVYSQTTAIRESNLPSNGNVEQACGLCHEPVEDPVVTSCEHIFCKACLIDFSASLGQVSCPTCSKLLTVDLTSNKDVGVQVNKTTIKGFRSSSILNRIRLENFQTSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVSCVQLNGSMSLAARDAAIKRFTDDPGCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVERQAQDRIHRIGQYKPIRIVRFVIENTIEERILKLQEKKELVFEGTIGGSSEALGKLTEADLKFLFVT* 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1836 900 Gene3D - 565 898 IPR027417 -
Amo13g1836 900 CDD DEXDc_SHPRH-like 187 548 - -
Amo13g1836 900 Pfam SNF2-related domain 203 623 IPR000330 GO:0005524|GO:0140658
Amo13g1836 900 MobiDBLite consensus disorder prediction 13 37 - -
Amo13g1836 900 SUPERFAMILY RING/U-box 631 690 - -
Amo13g1836 900 ProSitePatterns Zinc finger RING-type signature. 661 670 IPR017907 -
Amo13g1836 900 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 737 897 - -
Amo13g1836 900 CDD SF2_C_SNF 728 855 - -
Amo13g1836 900 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 410 735 - -
Amo13g1836 900 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 104 378 - -
Amo13g1836 900 PANTHER - 737 897 - -
Amo13g1836 900 MobiDBLite consensus disorder prediction 80 102 - -
Amo13g1836 900 SMART ultradead3 183 493 IPR014001 -
Amo13g1836 900 Gene3D - 354 564 IPR038718 -
Amo13g1836 900 PANTHER - 104 378 - -
Amo13g1836 900 PANTHER - 410 735 - -
Amo13g1836 900 ProSiteProfiles Zinc finger RING-type profile. 646 686 IPR001841 -
Amo13g1836 900 Gene3D - 189 332 IPR038718 -
Amo13g1836 900 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 147 548 IPR027417 -
Amo13g1836 900 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 200 475 IPR014001 -
Amo13g1836 900 SMART helicmild6 761 844 IPR001650 -
Amo13g1836 900 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 419 898 IPR027417 -
Amo13g1836 900 MobiDBLite consensus disorder prediction 13 30 - -
Amo13g1836 900 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 640 710 IPR013083 -
Amo13g1836 900 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 726 890 IPR001650 -
Amo13g1836 900 Pfam Helicase conserved C-terminal domain 730 844 IPR001650 -
Amo13g1836 900 Pfam zinc-RING finger domain 646 687 IPR001841 -
Amo13g1836 900 SMART ring_2 646 685 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1836 Amo-Chr13 27059340 27067813 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1836 118 900 RAD5 or RAD16-like Gene Family AT1G05120 67.816 0.0 1101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Amo13g1836 SNF2_N 9.7e-50 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1836 K15083 - gmx:100786366 1276.15